BioGeek
Follow
Lists (1)
Starred repositories
FDR control for mass spectrometry analysis using de novo and database search results
Central repository for biomolecular foundation models with shared trainers and pipeline components
Official implementation of All Atom Diffusion Transformers (ICML 2025)
gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function
Accompanying code for "Discovering State-of-the-art Reinforcement Algorithms" Nature publication
AgentFlow: In-the-Flow Agentic System Optimization
frozen-in-time version of our Paper Finder agent for reproducing evaluation results
GPU-optimized framework for training diffusion language models at any scale. The backend of Quokka, Super Data Learners, and OpenMoE 2 training.
Competitive GPU kernel optimization platform.
Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
Autonomous GPU Kernel Generation via Deep Agents
Earth system foundation model data, training, and eval
A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.
GPU-Accelerated Cosine Similarity for Tandem Mass Spectrometry
iDeepLC: A deep Learning-based retention time predictor for unseen modified peptides with a novel encoding system
We want to compare how good Qwen3-1.7B-Base using B200 to continue pretraining on Malaysian multi-lingual corpus on different mixed precision training with proper truncated multi-packing.
A set of ready to use scientific skills for Claude
A family of codon-resolution language models trained on 130 million protein-coding sequences from over 20,000 species.
Introduction to Machine Learning Systems
