Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.

Graphical user interface for de novo sequencing of tandem mass spectra

Protein Identification with Deep Learning

pytorch implementation of PointNovo

De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments

The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra