ArgoCD manifests for gen3 deployments using helm charts.

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.

Standard bioinformatics pipelines for omics data from spaceflight and space-relevant experiments.

N3C Machine Learning Working Group - a project to produce machine learning workflows in the N3C Enclave

Pipelines and scripts used to processed data related to COVID-19

Analysis of early Wuhan SARS-CoV-2 sequences from deleted SRA BioProject PRJNA612766

This is the development home of the workflow management system Snakemake. For general information, see

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Tool to check the completeness of MANIFEST.in for Python packages

PrediXcan Project

Execute a :command and show the output in a temporary buffer

Run (Python) unit tests under cursor