[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

Machine-learning-based general bacterial promoter prediction tool.

PARE: a computational method to Predict Active Regulatory Elements

Find two-boxes transcription factor binding sites (made for sigma factor binding sites) by comparing intergenic DNA regions upstream pairs of orthologous genes using statistical analyses

extract promoter sequence from A.thalian genome

Comprehensive in silico genomic analysis pipeline for domesticating non-model bacteria

Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow

As a cell-free DNA (cfDNA) processing pipeline, Triton conducts fragmentomic and phased-nucleosome coverage analyses on individual or composite genomic regions and outputs both region-level biomarkers and nt-resolution signal profiles.

miRNA promoter annotation based on deepCAGE data

This tool allows you to send predefined messages to target Instagram users. It sends your message to the targets every 3 minutes. You can use this tool to advertise your products to your potential customers. Just start the bot and lay down!

More accessible dump of the PWMs from ElemeNT (10.1080/21541264.2015.1067286)

A 2-in-1 script that leverages Pyota Libraries in order to spam the IOTA network (Tangle) or manually promote a transaction