phages

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Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes

bioinformatics annotation genomics genes bacteria phages

The art of decorating a phage genome by gluing feature cutouts into it.

bioinformatics annotation genome blast bacteria virology phages

Code and data for the analysis of TF-binding sites positional entropy in phage genomes, used in Mascolo et al. (2022)

Fast and accurate whole-genome clustering of (actino) bacteriophages

bioinformatics genome clustering phages

Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.

transposons mge plasmids phages cdiff clostyper clostridioides-difficile

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