Frequently used commands in bioinformatics

Local Retrieval-Augmented Generation (RAG) plugin for Claude Code that combines Chroma db vector embeddings with intelligent info retrieval with Multi-Agent Framework (MAF) orchestration for context-aware development assistance. Uses Open Source / Free frameworks. Implements bridge to Claude Code CLI so no token use. And it's easy to setup.

Linear inversion of two-dimensional isotropic-anisotropic NMR correlation spectrum.

WES Analysis scripts for "Immune determinants of response to neoadjuvant chemo-radiation in esophageal adenocarcinoma" publication

Create admixture model files (*.F, *.alleles) based on WBBC project of Westlake University.

This repository provides an AI-powered workflow for analyzing Mutation Annotation Format (MAF) files. It uses the CrewAI framework to orchestrate tasks such as summarizing MAF files, performing somatic interaction analysis, identifying drug-gene interactions, and generating a comprehensive Markdown report.