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consensus-sequences

Here are 7 public repositories matching this topic...

jonas-fuchs / varVAMP

Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.

Updated Jan 13, 2026
Python

RIVM-bioinformatics / ViroConstrictor

ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome

python bioinformatics snakemake analysis public-health viruses virology ngs-analysis snakemake-workflow rivm consensus-sequences

Updated Jan 13, 2026
Python

RIVM-bioinformatics / SARS2seq

SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.

python bioinformatics snakemake public-health viruses virology ngs-analysis snakemake-workflow rivm consensus-sequences coronavirus coronavirus-analysis

Updated Jul 3, 2024
Python

hivlab / sarscov2-variation

SARS-CoV-2 sequencing workflow

workflow snakemake snakemake-workflow consensus-sequences covid-19 sars-cov-2 covid-19-estonia snakefile korogeno-est sarscov2-variation

Updated Jan 26, 2022
Python

sunnyosun / LINE-1-retrotransposon

Tools for analyzing LINE-1 elements

chip-seq sequence consensus-sequences repetitive-elements

Updated Apr 12, 2022
Python

kalyaniasthana / consensus_design_pipeline_old

bioinformatics bioinformatics-pipeline protein-sequences sequence-alignment bioinformatics-tool consensus-sequences direct-coupling-analysis

Updated Jun 30, 2020
Python

kalyaniasthana / ncbs_coding_exercise

bioinformatics sequence-alignment bioinformatics-algorithms consensus-sequences profile-matrices

Updated Jun 17, 2020
Python

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