Application consisting of:

• standardized snakemake pipelines for downloading and processing multi-omics data from:
  • cBioPortal
  • GLASS consortium project from synapse
• Docker container for running a jupyter container
• Extension of muon for annotating features with genomic ranges data.
• Ansible script for installing docker -> Necessary for deploying application.

Alternatively the easi.jupyter file is variant where the entire project is deployed in one docker container, which can be useful for deploying in Dockerized jupyter environments.

• Ensue that Docker is installed on the machine/VM where this is going to run.
• (optional) Including potential credentials in an .env file for deployment.
• Run docker-compose