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JensenLab website

HTML 3 1 Updated Jan 24, 2026

Cytoscape interface to STRING and STITCH

Java 11 11 Updated May 9, 2025

Material for 2024 Summer School on Applied Deep Learning in Bioinformatics

Jupyter Notebook 7 2 Updated Aug 12, 2024
TypeScript 5 Updated Dec 13, 2024

EuBIC-MS Developers Meeting 2025 on Computational Mass Spectrometry

11 Updated Nov 8, 2024

Material for 2023 Summer School on Applied Deep Learning in Bioinformatics

Jupyter Notebook 8 Updated Aug 8, 2023

ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to allow a continuous, easy, and controlled comparison of prot…

Jupyter Notebook 50 22 Updated Feb 20, 2026

EuBIC 2023 developer's meeting

Makefile 13 1 Updated Jan 16, 2023

TFEA.ChIP is an R package in developement. Its purpose is to analyze transcription factor enrichment in a set of differentially expressed genes.

6 1 Updated Feb 3, 2022

TFEA.ChIP is an R package in developement. Its purpose is to analyze transcription factor enrichment in a set of differentially expressed genes.

R 2 2 Updated Jul 1, 2025

This repository contains a python script that can be used to produce a dot plot describing enrichment data such as those produced by the Cytoscape app: stringApp.

Python 2 Updated Oct 25, 2021

Cytoscape: an open source platform for network analysis and visualization

Shell 686 149 Updated Sep 27, 2025

Omics Visualizer App for Cytoscape 3

Java 4 2 Updated Dec 19, 2025

matplotlib: plotting with Python

Python 22,477 8,212 Updated Feb 20, 2026

Cytoscape 3 Structure Visualization App

Java 3 4 Updated Aug 26, 2016