Conditional RNA Partition Function for Density-2 Pseudoknotted Secondary Structure

Bialignment of RNAs and proteins

RNAlien - unsupervised RNA family model construction

MFE method for predicting the psuedoknotted secondary structures of RNA sequences.

Efficient target prediction incorporating accessibility of interaction sites

🐳📊📚 Docker Images tracking the stable Galaxy releases.

Galaxy RNA workbench

Compute folding dynamics on coarse grained version of an energy landscape by numeric integration of a Markov process

The ViennaRNA Package

A modern, C++-native, test framework for unit-tests, TDD and BDD - using C++14, C++17 and later (C++11 support is in v2.x branch, and C++03 on the Catch1.x branch)

Alignment of RNAs

Conda recipes for the bioconda channel.