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c++ library for representing and interacting the gated cytometry data structure
K-HILL calculates the effective number of genomes in a collection of assembled genomes.
Estimate Stain Index for single stained cytometry files.
Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
R package offering functionality for the advanced analysis of microbial flow cytometry data
R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.
🐝 Awesome R and Python packages offering extended UI or server components for the web framework Shiny
Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations
Hierarchical Pitman-Yor Gibbs sampler and diversity estimation
Shiny applications internationalization made easy
ggplot extension: options for tailored facets, multiple colourscales and miscellaneous
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
Incubator for useful bioinformatics code, primarily in Python and R
validate your data and create nice reports straight from R
The open source developer platform to build AI agents and models with confidence. Enhance your AI applications with end-to-end tracking, observability, and evaluations, all in one integrated platform.
Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
Horizontal gene transfer (HGT) identification pipeline
Shiny support for powerful Fomantic UI library.
CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
vngFCM is a package designed to analyse fluocytometry data of small bacterial cells.