Bump the py-updates group across 1 directory with 83 updates #190

dependabot · 2026-01-26T04:37:31Z

Bumps the py-updates group with 83 updates in the / directory:

Package	From	To
awscli	`1.40.17`	`1.44.24`
polars	`1.28.1`	`1.37.1`
requests	`2.32.3`	`2.32.5`
biopython	`1.85`	`1.86`
boto3	`1.38.18`	`1.42.34`
botocore	`1.38.18`	`1.42.34`
certifi	`2025.4.26`	`2026.1.4`
charset-normalizer	`3.4.2`	`3.4.4`
cloudpathlib	`0.21.1`	`0.23.0`
docutils	`0.19`	`0.22.4`
idna	`3.10`	`3.11`
jellyfish	`1.2.0`	`1.2.1`
jmespath	`1.0.1`	`1.1.0`
markdown-it-py	`3.0.0`	`4.0.0`
numpy	`2.2.5`	`2.4.1`
pandas	`2.2.3`	`3.0.0`
pyarrow	`20.0.0`	`23.0.0`
pyasn1	`0.6.1`	`0.6.2`
pygments	`2.19.1`	`2.19.2`
pyyaml	`6.0.2`	`6.0.3`
rich	`14.0.0`	`14.3.1`
rsa	`4.7.2`	`4.9.1`
s3transfer	`0.12.0`	`0.16.0`
structlog	`25.3.0`	`25.5.0`
tzdata	`2025.2`	`2025.3`
urllib3	`2.4.0`	`2.6.3`
zstandard	`0.23.0`	`0.25.0`
boto3-stubs	`1.38.18`	`1.42.34`
botocore-stubs	`1.38.18`	`1.42.34`
cffi	`1.17.1`	`2.0.0`
coverage	`7.8.0`	`7.13.2`
cryptography	`44.0.3`	`46.0.3`
freezegun	`1.5.1`	`1.5.5`
iniconfig	`2.1.0`	`2.3.0`
markupsafe	`3.0.2`	`3.0.3`
moto	`5.1.4`	`5.1.20`
mypy	`1.15.0`	`1.19.1`
mypy-boto3-s3	`1.38.0`	`1.42.21`
packaging	`25.0`	`26.0`
pycparser	`2.22`	`3.0`
pytest	`8.3.5`	`9.0.2`
pytest-mock	`3.14.0`	`3.15.1`
responses	`0.25.7`	`0.25.8`
ruff	`0.11.10`	`0.14.14`
types-awscrt	`0.27.2`	`0.31.1`
types-requests	`2.32.0.20250515`	`2.32.4.20260107`
types-s3transfer	`0.12.0`	`0.16.0`
typing-extensions	`4.13.2`	`4.15.0`
werkzeug	`3.1.3`	`3.1.5`
xmltodict	`0.14.2`	`1.0.2`
alabaster	`0.7.16`	`1.0.0`
anyio	`4.9.0`	`4.12.1`
beautifulsoup4	`4.13.4`	`4.14.3`
cachecontrol	`0.14.3`	`0.14.4`
click	`8.2.0`	`8.3.1`
contourpy	`1.3.2`	`1.3.3`
filelock	`3.18.0`	`3.20.3`
fonttools	`4.58.0`	`4.61.1`
furo	`2024.8.6`	`2025.12.19`
kiwisolver	`1.4.8`	`1.4.9`
matplotlib	`3.10.3`	`3.10.8`
mdit-py-plugins	`0.4.2`	`0.5.0`
more-itertools	`10.7.0`	`10.8.0`
msgpack	`1.1.0`	`1.1.2`
myst-parser	`4.0.1`	`5.0.0`
pillow	`11.2.1`	`12.1.0`
platformdirs	`4.3.8`	`4.5.1`
pyparsing	`3.2.3`	`3.3.2`
ruamel-yaml	`0.18.10`	`0.19.1`
ruamel-yaml-clib	`0.2.12`	`0.2.15`
soupsieve	`2.7`	`2.8.3`
sphinx	`7.3.7`	`9.0.4`
sphinx-autobuild	`2024.10.3`	`2025.8.25`
sphinx-autodoc-typehints	`2.3.0`	`3.6.1`
sphinx-jinja2-compat	`0.3.0`	`0.4.1`
sphinx-prompt	`1.8.0`	`1.10.2`
sphinx-tabs	`3.4.5`	`3.4.7`
sphinx-toolbox	`4.0.0`	`4.1.2`
sphinxext-opengraph	`0.10.0`	`0.13.0`
starlette	`0.46.2`	`0.52.1`
uvicorn	`0.34.2`	`0.40.0`
watchfiles	`1.0.5`	`1.1.1`
websockets	`15.0.1`	`16.0`

Updates awscli from 1.40.17 to 1.44.24

Commits

3af1873 Merge branch 'release-1.44.24'
3db4f00 Bumping version to 1.44.24
2c19a9f Update changelog based on model updates
80d7965 Merge branch 'release-1.44.23'
75d1e11 Merge branch 'release-1.44.23' into develop
a220ab9 Bumping version to 1.44.23
c48c8ab Update changelog based on model updates
39e70df Merge branch 'release-1.44.22'
094e6fa Merge branch 'release-1.44.22' into develop
4cd22ad Bumping version to 1.44.22
Additional commits viewable in compare view

Updates polars from 1.28.1 to 1.37.1

Release notes

Sourced from polars's releases.

Python Polars 1.37.1

🚀 Performance improvements

Speed up SQL interface "UNION" clauses (#26039)

🐞 Bug fixes

Optimize slicing support on compressed IPC (#26071)

CPU check for musl builds (#26076)

Propagate C Stream import errors instead of panicking (#26036)

Fix slicing on compressed IPC (#26066)

📖 Documentation

Clarify min_by/max_by behavior on ties (#26077)

🛠️ Other improvements

Mark top slow normal tests as slow (#26080)

Update breaking deps (#26055)

Fix for upstream url bug and update deps (#26052)

Properly pin chrono (#26051)

Don't run rust doctests (#26046)

Update deps (#26042)

Ignore very slow test (#26041)

Thank you to all our contributors for making this release possible! @Voultapher, @alexander-beedie, @kdn36, @nameexhaustion, @orlp, @ritchie46 and @wtn

Python Polars 1.37.0

🚀 Performance improvements

Speed up SQL interface "ORDER BY" clauses (#26037)

Add fast kernel for is_nan and use it for numpy NaN->null conversion (#26034)

Optimize ArrayFromIter implementations for ObjectArray (#25712)

New streaming NDJSON sink pipeline (#25948)

New streaming CSV sink pipeline (#25900)

Dispatch partitioned usage of sink_* functions to new-streaming by default (#25910)

Replace ryu with faster zmij (#25885)

Reduce memory usage for .item() count in grouped first/last (#25787)

Skip schema inference if schema provided for scan_csv/ndjson (#25757)

Add width-aware chunking to prevent degradation with wide data (#25764)

Use new sink pipeline for write/sink_ipc (#25746)

Reduce memory usage when scanning multiple parquet files in streaming (#25747)

Don't call cluster_with_columns optimization if not needed (#25724)

✨ Enhancements

Add new pl.PartitionBy API (#26004)

ArrowStreamExportable and sink_delta (#25994)

... (truncated)

Commits

bb79993 Python Polars 1.37.1 (#26078)
26a9d09 chore: Mark top slow normal tests as slow (#26080)
451f247 refactor(rust): Simplify PlPath (#26053)
b532aad docs: Clarify min_by/max_by behavior on ties (#26077)
7077967 fix: Optimize slicing support on compressed IPC (#26071)
44c1397 fix: CPU check for musl builds (#26076)
35ec398 chore: Update breaking deps (#26055)
84fa663 fix(python): Propagate C Stream import errors instead of panicking (#26036)
e9e20e4 fix: Fix slicing on compressed IPC (#26066)
b0fdbd3 chore: Fix for upstream url bug and update deps (#26052)
Additional commits viewable in compare view

Updates requests from 2.32.3 to 2.32.5

Release notes

Sourced from requests's releases.

v2.32.5

2.32.5 (2025-08-18)

Bugfixes

The SSLContext caching feature originally introduced in 2.32.0 has created a new class of issues in Requests that have had negative impact across a number of use cases. The Requests team has decided to revert this feature as long term maintenance of it is proving to be unsustainable in its current iteration.

Deprecations

Added support for Python 3.14.

Dropped support for Python 3.8 following its end of support.

v2.32.4

2.32.4 (2025-06-10)

Security

CVE-2024-47081 Fixed an issue where a maliciously crafted URL and trusted environment will retrieve credentials for the wrong hostname/machine from a netrc file. (#6965)

Improvements

Numerous documentation improvements

Deprecations

Added support for pypy 3.11 for Linux and macOS. (#6926)

Dropped support for pypy 3.9 following its end of support. (#6926)

Changelog

Sourced from requests's changelog.

2.32.5 (2025-08-18)

Bugfixes

The SSLContext caching feature originally introduced in 2.32.0 has created a new class of issues in Requests that have had negative impact across a number of use cases. The Requests team has decided to revert this feature as long term maintenance of it is proving to be unsustainable in its current iteration.

Deprecations

Added support for Python 3.14.

Dropped support for Python 3.8 following its end of support.

2.32.4 (2025-06-10)

Security

CVE-2024-47081 Fixed an issue where a maliciously crafted URL and trusted environment will retrieve credentials for the wrong hostname/machine from a netrc file.

Improvements

Numerous documentation improvements

Deprecations

Added support for pypy 3.11 for Linux and macOS.

Dropped support for pypy 3.9 following its end of support.

Commits

b25c87d v2.32.5
131e506 Merge pull request #7010 from psf/dependabot/github_actions/actions/checkout-...
b336cb2 Bump actions/checkout from 4.2.0 to 5.0.0
46e939b Update publish workflow to use artifact-id instead of name
4b9c546 Merge pull request #6999 from psf/dependabot/github_actions/step-security/har...
7618dbe Bump step-security/harden-runner from 2.12.0 to 2.13.0
2edca11 Add support for Python 3.14 and drop support for Python 3.8 (#6993)
fec96cd Update Makefile rules (#6996)
d58d8aa docs: clarify timeout parameter uses seconds in Session.request (#6994)
91a3eab Bump github/codeql-action from 3.28.5 to 3.29.0
Additional commits viewable in compare view

Updates biopython from 1.85 to 1.86

Changelog

Sourced from biopython's changelog.

28 October 2025: Biopython 1.86

This release of Biopython supports Python 3.10, 3.11, 3.12, 3.13 and 3.14. It has also been tested on PyPy3.10 v7.3.19.

Bio.SearchIO now supports parsing the tabular and plain text output of Infernal <http://eddylab.org/infernal/> (v1.0.0+) RNA search tool. The format names are infernal-tab and infernal-text.

The default value of the gap score of a PairwiseAligner object was changed in this release. Previously, for consistency with Bio.pairwise2, the default value for gap score was 0. However, this means that a mismatch, an insertion followed by a deletion, and a deletion followed by an insertion all get assigned a score of 0. The aligner then finds a large number of alignments that are logically the same, but have trivial differences between them. For example, aligning AAACAAA to AAAGAAA previously yielded the following three alignments, all with score 6::
 AAACAAA        AAAC-AAA        AAA-CAAA
 AAAGAAA        AAA-GAAA        AAAG-AAA
With the new default parameter for the gap score, only the first alignment is returned.

Bio.PDB.PDBIO now ensures that b-factor values are always at most 6 characters to ensure that we do not violate the wwPDB specification. This should not have an impact on the majority of uses, as b-factor values are generally small (less than 100). When 1000 <= b-factor < 10_000, the value is rounded to a single decimal place. When, 10_000 <= b-factor < 999_999, the value is rounded to zero decimal places. Values above 999_999 are now clamped. The justification for this is the rise in the b-factor field being used for additional metadata, typically from computational tools.

Bio.Align now provides a method Alignment.from_alignments_with_same_reference to construct a multiple sequence alignment from a collection of alignments that share the same reference sequence.

Bio.PDB.PDBIO will now raise module specific warnings: Bio.PDB.PDBExceptions.PDBIOWarning.

Bio.PDB.SCADIO now supports object selection by color in the OpenSCAD output file. This enables generation of separate STL files for each color for printing protein structures on multi-material 3D printers.

The iplotx library is mentioned in the Tutorial as an option to visualise trees using complex style options.

Many thanks to the Biopython developers and community for making this release possible, especially the following contributors:

... (truncated)

Commits

See full diff in compare view

Updates boto3 from 1.38.18 to 1.42.34

Commits

9a285e6 Merge branch 'release-1.42.34'
2957415 Bumping version to 1.42.34
8e1fd2e Add changelog entries from botocore
9cadce5 Merge branch 'release-1.42.33'
ee24f15 Merge branch 'release-1.42.33' into develop
b0f2cf3 Bumping version to 1.42.33
6e690ed Add changelog entries from botocore
b84ec5e Add BOTOCORE_TCP_KEEPALIVE environment variable documentation (#4705)
36cebd3 Merge branch 'release-1.42.32'
d4d1044 Merge branch 'release-1.42.32' into develop
Additional commits viewable in compare view

Updates botocore from 1.38.18 to 1.42.34

Commits

d52e6ce Merge branch 'release-1.42.34'
fce5268 Bumping version to 1.42.34
45e43f9 Update to latest models
b9ed58f Merge branch 'release-1.42.33'
48062d2 Merge branch 'release-1.42.33' into develop
8eb5ab6 Bumping version to 1.42.33
05b651e Update endpoints model
aba6769 Update to latest models
3549e01 Merge branch 'release-1.42.32'
0847d5e Merge branch 'release-1.42.32' into develop
Additional commits viewable in compare view

Updates certifi from 2025.4.26 to 2026.1.4

Commits

c64d9f3 2026.01.04 (#389)
4ac232f Bump actions/download-artifact from 6.0.0 to 7.0.0 (#387)
95ae4b2 Update CI workflow to use Ubuntu 24.04 and Python 3.14 stable (#386)
b72a7b1 Bump dessant/lock-threads from 5.0.1 to 6.0.0 (#385)
ecc2672 Bump actions/upload-artifact from 5.0.0 to 6.0.0 (#384)
6a897db Bump peter-evans/create-pull-request from 7.0.11 to 8.0.0 (#383)
27ca98a Bump peter-evans/create-pull-request from 7.0.9 to 7.0.11 (#381)
56c59a6 Bump actions/checkout from 6.0.0 to 6.0.1 (#382)
ae0021c Bump actions/setup-python from 6.0.0 to 6.1.0 (#380)
ddf5d0b Bump actions/checkout from 5.0.1 to 6.0.0 (#378)
Additional commits viewable in compare view

Updates charset-normalizer from 3.4.2 to 3.4.4

Release notes

Sourced from charset-normalizer's releases.

Version 3.4.4

3.4.4 (2025-10-13)

Changed

Bound setuptools to a specific constraint setuptools>=68,<=81.

Raised upper bound of mypyc for the optional pre-built extension to v1.18.2

Removed

setuptools-scm as a build dependency.

Misc

Enforced hashes in dev-requirements.txt and created ci-requirements.txt for security purposes.

Additional pre-built wheels for riscv64, s390x, and armv7l architectures.

Restore multiple.intoto.jsonl in GitHub releases in addition to individual attestation file per wheel.

Version 3.4.3

3.4.3 (2025-08-09)

Changed

mypy(c) is no longer a required dependency at build time if CHARSET_NORMALIZER_USE_MYPYC isn't set to 1. (#595) (#583)

automatically lower confidence on small bytes samples that are not Unicode in detect output legacy function. (#391)

Added

Custom build backend to overcome inability to mark mypy as an optional dependency in the build phase.

Support for Python 3.14

Fixed

sdist archive contained useless directories.

automatically fallback on valid UTF-16 or UTF-32 even if the md says it's noisy. (#633)

Misc

SBOM are automatically published to the relevant GitHub release to comply with regulatory changes. Each published wheel comes with its SBOM. We choose CycloneDX as the format.

Prebuilt optimized wheel are no longer distributed by default for CPython 3.7 due to a change in cibuildwheel.

Changelog

Sourced from charset-normalizer's changelog.

3.4.4 (2025-10-13)

Changed

Bound setuptools to a specific constraint setuptools>=68,<=81.

Raised upper bound of mypyc for the optional pre-built extension to v1.18.2

Removed

setuptools-scm as a build dependency.

Misc

Enforced hashes in dev-requirements.txt and created ci-requirements.txt for security purposes.

Additional pre-built wheels for riscv64, s390x, and armv7l architectures.

Restore multiple.intoto.jsonl in GitHub releases in addition to individual attestation file per wheel.

3.4.3 (2025-08-09)

Changed

mypy(c) is no longer a required dependency at build time if CHARSET_NORMALIZER_USE_MYPYC isn't set to 1. (#595) (#583)

automatically lower confidence on small bytes samples that are not Unicode in detect output legacy function. (#391)

Added

Custom build backend to overcome inability to mark mypy as an optional dependency in the build phase.

Support for Python 3.14

Fixed

sdist archive contained useless directories.

automatically fallback on valid UTF-16 or UTF-32 even if the md says it's noisy. (#633)

Misc

SBOM are automatically published to the relevant GitHub release to comply with regulatory changes. Each published wheel comes with its SBOM. We choose CycloneDX as the format.

Prebuilt optimized wheel are no longer distributed by default for CPython 3.7 due to a change in cibuildwheel.

Commits

b30ffdc 🔧 fix checksum step in cd.yml
d3fbfcf 🔧 fix cd.yml
dafbb95 Release 3.4.4 (#658)
1f18ffa ⬆️ raise mypy upper bound to 1.18.2
ef4ac69 Merge branch 'release-3.4.4' of github.com:jawah/charset_normalizer into rele...
4b35dda 📝 write changelog for 3.4.4
0ec6452 🔧 update cd.yml workflow (add riscv64, s390x and armv7l)
f341ede ⬆️ upgrade dependencies (dev, ci)
a308841 📝 write changelog for 3.4.4
9c906da 🔧 update cd.yml workflow (add riscv64, s390x and armv7l)
Additional commits viewable in compare view

Updates cloudpathlib from 0.21.1 to 0.23.0

Release notes

Sourced from cloudpathlib's releases.

v0.23.0

Added support for Python 3.14 (Issue #529, PR #530)

Changed CloudPath.copy to have the first parameter named target instead of destination and added new follow_symlinks and preserve_metadata kwargs. Breaking change for users that relied on the first parameter being named destination instead of target.

Added CloudPath.copy_into to copy a file or directory into another file or directory.

Added CloudPath.move to move a file or directory to another location.

Added CloudPath.move_into to move a file or directory into another file or directory.

Added CloudPathInfo and CloudPath.info to get information about a file or directory.

Added additional no-op kwargs to mkdir, touch, glob, rglob, stat to match pathlib.

v0.22.0

Fixed issue with GS credentials, using default auth enables a wider set of authentication methods in GS (Issue #390, PR #514, thanks @ljyanesm)

Added support for http(s) urls with HttpClient, HttpPath, HttpsClient, and HttpsPath. (Issue #455, PR #468)

Added experimental support for patching the builtins open, os, os.path, and glob to work with CloudPath objects. It is off by default; see the new "Compatibility" section in the docs for more information. (Issue #128, PR #322)

Added support for CloudPath(*parts) to create a CloudPath object from a list of parts (to match pathlib.Path). This is a potentially breaking change for users that relied on the second arg being the client instead of making it an explicit kwarg. (PR #322)

Changelog

Sourced from cloudpathlib's changelog.

v0.23.0 (2025-10-07)

Added support for Python 3.14 (Issue #529, PR #530)

Changed CloudPath.copy to have the first parameter named target instead of destination and added new follow_symlinks and preserve_metadata kwargs. Breaking change for users that relied on the first parameter being named destination instead of target.

Added CloudPath.copy_into to copy a file or directory into another file or directory.

Added CloudPath.move to move a file or directory to another location.

Added CloudPath.move_into to move a file or directory into another file or directory.

Added CloudPathInfo and CloudPath.info to get information about a file or directory.

Added additional no-op kwargs to mkdir, touch, glob, rglob, stat to match pathlib.

v0.22.0 (2025-08-29)

Fixed issue with GS credentials, using default auth enables a wider set of authentication methods in GS (Issue #390, PR #514, thanks @ljyanesm)

Added support for http(s) urls with HttpClient, HttpPath, HttpsClient, and HttpsPath. (Issue #455, PR #468)

Added experimental support for patching the builtins open, os, os.path, and glob to work with CloudPath objects. It is off by default; see the new "Compatibility" section in the docs for more information. (Issue #128, PR #322)

Added support for CloudPath(*parts) to create a CloudPath object from a list of parts (to match pathlib.Path). This is a potentially breaking change for users that relied on the second arg being the client instead of making it an explicit kwarg. (PR #322)

Commits

28f1d94 WIP Support 3.14 (#530)
fec5918 Bump pypa/gh-action-pypi-publish in /.github/workflows (#531)
e790002 version bump
bb1f1e4 WIP: Patch open, os and os.path builtins (#322)
1200550 Refactor GS authentication to use default credentials (#514) (#526)
b21cac1 Implement HTTP(s) support (#468)
863e884 fix for azure typing differences (#524)
65c5c01 Set pytest-cases>=3.9.1 (#520)
See full diff in compare view

Updates docutils from 0.19 to 0.22.4

Commits

See full diff in compare view

Updates idna from 3.10 to 3.11

Changelog

Sourced from idna's changelog.

3.11 (2025-10-12)

Update to Unicode 16.0.0, including significant changes to UTS46 processing. As a result of Unicode ending support for it, transitional processing no longer has an effect and returns the same result.

Add support for Python 3.14, lowest supported version is Python 3.8.

Various updates to packaging, including PEP 740 support.

Commits

ad949ee Release v3.11
cae4ba7 Second release candidate for 3.11
8adb305 Add space in RST link
74cb2b6 Release candidate for 3.11
05dab09 Format idna-data with ruff
90eac78 Apply ruff formatting
a31ce7e Remove errant test vectors
81f0333 Omit vectors known to be broken in test suite
a0f3257 Merge branch 'master' into unicode-16-uts46-changes
38d9886 Remove extra UTS46 test vector
Additional commits viewable in compare view

Updates jellyfish from 1.2.0 to 1.2.1

Updates jmespath from 1.0.1 to 1.1.0

Changelog

Sourced from jmespath's changelog.

1.1.0

Fix concurrency issue with cache (pr [#335](https://github.com/jmespath/jmespath.py/issues/335) <https://github.com/jmespath/jmespath.py/pull/335>__)

Added support for Python 3.12-3.14 (pr [#331](https://github.com/jmespath/jmespath.py/issues/331) <https://github.com/jmespath/jmespath.py/pull/331>__)

Removed support for Python 3.7-3.8 (pr [#335](https://github.com/jmespath/jmespath.py/issues/335) <https://github.com/jmespath/jmespath.py/pull/335>__)

Commits

6ff419a Merge branch 'release-1.1.0'
17e964f Bump version to 1.1.0
5ce13aa Merge branch 'v1.1.0' into develop
d8f0457 Revert versions back to current version
8cb3082 1.1.0
6e37991 Update permissions in codeql.yml workflow (#338)
141734d Bring .github settings up-to-date (#336)
07e30cf Merge pull request #337 from nateprewitt/python_changelog
9170711 Add missing changelog entries for Python support
cdb9327 Fix file encoding for Windows
Additional commits viewable in compare view

Updates markdown-it-py from 3.0.0 to 4.0.0

Release notes

Sourced from markdown-it-py's releases.

v4.0.0

What's Changed

This primarily drops support for Python 3.8 and 3.9, adds support for Python 3.13, and updates the parser to comply with Commonmark 0.31.2 and Markdown-It v14.1.0.

Upgrades

⬆️ Drop Python 3.8, test 3.13 by @chrisjsewell in executablebooks/markdown-it-py#342

⬆️ Drop support for Python 3.9 by @chrisjsewell in executablebooks/markdown-it-py#360

⬆️ Comply with Commonmark 0.31.2 by @chrisjsewell in executablebooks/markdown-it-py#362

Improvements

👌 Improve performance of "text" inline rule by @hukkin in executablebooks/markdown-it-py#347

👌 Use str.removesuffix by @hukkin in executablebooks/markdown-it-py#348

👌 limit the number of autocompleted cells in a table by @chrisjsewell in executablebooks/markdown-it-py#364

👌 fix quadratic complexity in reference parser by @chrisjsewell in executablebooks/markdown-it-py#367

Bug fixes

🐛 Fix emphasis inside raw links bugs by @tsutsu3 in executablebooks/markdown-it-py#320

Maintenance

🔧 Replace black and isort with ruff formatter by @chrisjsewell in executablebooks/markdown-it-py#313

🔧 Fixed Code Style paragraph still referring to flake8 by @venthur in executablebooks/markdown-it-py#309

🔧 Add "store_labels" to OptionsType by @chrisjsewell in executablebooks/markdown-it-py#343

🔧 Move code_style to dependency group by @chrisjsewell in executablebooks/markdown-it-py#344

🔧 Update codecov action by @chrisjsewell in executablebooks/markdown-it-py#345

🔧 Update pre-commit and upload-artifact by @chrisjsewell in executablebooks/markdown-it-py#359

🔧 Improve spec update script by @chrisjsewell in executablebooks/markdown-it-py#361

🔧 simplify logic in scanDelims by @chrisjsewell in executablebooks/markdown-it-py#365

🧪 Add CI testing for Python 3.12 by @hugovk in executablebooks/markdown-it-py#303

🧪 Fix codecov by @chrisjsewell in executablebooks/markdown-it-py#332

Documentation

📚 Fix typo by @bwagner in executablebooks/markdown-it-py#315

📚 Fix RTD build by @chrisjsewell in executablebooks/markdown-it-py#322

📚 DOCS: Fix a few old URLs by @elijahgreenstein in executablebooks/markdown-it-py#358

📚 Improve README by @mrmurilo75 in executablebooks/markdown-it-py#340

📚 Fix CI badge link by @tsutsu3 in executablebooks/markdown-it-py#291

📚 Update docs by @chrisjsewell in executablebooks/markdown-it-py#292

📚 Add icon to readme by @chrisjsewell in executablebooks/markdown-it-py#293

📚 Update icon by @chrisjsewell in executablebooks/markdown-it-py#294

📚 DOCS: Clarify docs regarding security configuration by @djramones in executablebooks/markdown-it-py#296

📚 Fix the RTD build by @chrisjsewell in executablebooks/markdown-it-py#311

📚 DOCS: Fix typos by @elijahgreenstein in executablebooks/markdown-it-py#366

... (truncated)

Changelog

Sourced from markdown-it-py's changelog.

4.0.0 - 2024-08-10

This primarily drops support for Python 3.9, adds support for Python 3.13, and updates the parser to comply with Commonmark 0.31.2 and Markdown-It v14.1.0.

⬆️ Drop support for Python 3.9 in #360

⬆️ Comply with Commonmark 0.31.2 in #362

👌 Improve performance of "text" inline rule in #347

👌 Use str.removesuffix in #348

👌 limit the number of autocompleted cells in a table in #364

👌 fix quadratic complexity in reference parser in #367

🐛 Fix emphasis inside raw links bugs in #320

Full Changelog: executablebooks/markdown-it-py@v3.0.0...v4.0.0

Commits

c62983f 🚀 RELEASE v4.0.0 (#368)
9e93bd5 👌 fix quadratic complexity in reference parser (#367)
da45c87 📚 DOCS: Fix typos (#366)
87b16e2 🔧 simplify logic in scanDelims (#365)
e400964 👌 limit the number of autocompleted cells in a table (#364)
4535d77 ⬆️ Comply with Commonmark 0.31.2 (#362)
8eb20ac 🔧 Improve spec update script (#361)
fb9d3ab ⬆️ Drop support for Python 3.9 (#360)
9ffe841 📚 DOCS: Fix a few old URLs (#358)
154fe43 🔧 Update pre-commit and upload-artifact (#359)
Additional commits viewable in compare view

Updates numpy from 2.2.5 to 2.4.1

Release notes

Sourced from numpy's releases.

2.4.1 (Jan 10, 2026)

NumPy 2.4.1 Release Notes

The NumPy 2.4.1 is a patch release that fixes bugs discoved after the 2.4.0 release. In particular, the typo SeedlessSequence is preserved to enable wheels using the random Cython API and built against NumPy < 2.4.0 to run without errors.

This release supports Python versions 3.11-3.14

Contributors

A total of 9 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

Alexander Shadchin

Bill Tompkins +

Charles Harris

Joren Hammudoglu

Marten van Kerkwijk

Nathan Goldbaum

Raghuveer Devulapalli

Ralf Gommers

Sebastian Berg

Pull requests merged

A total of 15 pull requests were merged for this release.

#30490: MAINT: Prepare 2.4.x for further development

#30503: DOC: numpy.select: fix default parameter docstring...

#30504: REV: Revert part of #30164 (#30500)

#30506: TYP: numpy.select: allow passing array-like default...

#30507: MNT: use if constexpr for compile-time branch selection

#30513: BUG: Fix leak i...
Description has been truncated

Bumps the py-updates group with 83 updates in the / directory: | Package | From | To | | --- | --- | --- | | [awscli](https://github.com/aws/aws-cli) | `1.40.17` | `1.44.24` | | [polars](https://github.com/pola-rs/polars) | `1.28.1` | `1.37.1` | | [requests](https://github.com/psf/requests) | `2.32.3` | `2.32.5` | | [biopython](https://github.com/biopython/biopython) | `1.85` | `1.86` | | [boto3](https://github.com/boto/boto3) | `1.38.18` | `1.42.34` | | [botocore](https://github.com/boto/botocore) | `1.38.18` | `1.42.34` | | [certifi](https://github.com/certifi/python-certifi) | `2025.4.26` | `2026.1.4` | | [charset-normalizer](https://github.com/jawah/charset_normalizer) | `3.4.2` | `3.4.4` | | [cloudpathlib](https://github.com/drivendataorg/cloudpathlib) | `0.21.1` | `0.23.0` | | [docutils](https://github.com/rtfd/recommonmark) | `0.19` | `0.22.4` | | [idna](https://github.com/kjd/idna) | `3.10` | `3.11` | | [jellyfish](https://jellyfish.jpt.sh/) | `1.2.0` | `1.2.1` | | [jmespath](https://github.com/jmespath/jmespath.py) | `1.0.1` | `1.1.0` | | [markdown-it-py](https://github.com/executablebooks/markdown-it-py) | `3.0.0` | `4.0.0` | | [numpy](https://github.com/numpy/numpy) | `2.2.5` | `2.4.1` | | [pandas](https://github.com/pandas-dev/pandas) | `2.2.3` | `3.0.0` | | [pyarrow](https://github.com/apache/arrow) | `20.0.0` | `23.0.0` | | [pyasn1](https://github.com/pyasn1/pyasn1) | `0.6.1` | `0.6.2` | | [pygments](https://github.com/pygments/pygments) | `2.19.1` | `2.19.2` | | [pyyaml](https://github.com/yaml/pyyaml) | `6.0.2` | `6.0.3` | | [rich](https://github.com/Textualize/rich) | `14.0.0` | `14.3.1` | | [rsa](https://github.com/sybrenstuvel/python-rsa) | `4.7.2` | `4.9.1` | | [s3transfer](https://github.com/boto/s3transfer) | `0.12.0` | `0.16.0` | | [structlog](https://github.com/hynek/structlog) | `25.3.0` | `25.5.0` | | [tzdata](https://github.com/python/tzdata) | `2025.2` | `2025.3` | | [urllib3](https://github.com/urllib3/urllib3) | `2.4.0` | `2.6.3` | | [zstandard](https://github.com/indygreg/python-zstandard) | `0.23.0` | `0.25.0` | | [boto3-stubs](https://github.com/youtype/mypy_boto3_builder) | `1.38.18` | `1.42.34` | | [botocore-stubs](https://github.com/youtype/botocore-stubs) | `1.38.18` | `1.42.34` | | [cffi](https://github.com/python-cffi/cffi) | `1.17.1` | `2.0.0` | | [coverage](https://github.com/coveragepy/coveragepy) | `7.8.0` | `7.13.2` | | [cryptography](https://github.com/pyca/cryptography) | `44.0.3` | `46.0.3` | | [freezegun](https://github.com/spulec/freezegun) | `1.5.1` | `1.5.5` | | [iniconfig](https://github.com/pytest-dev/iniconfig) | `2.1.0` | `2.3.0` | | [markupsafe](https://github.com/pallets/markupsafe) | `3.0.2` | `3.0.3` | | [moto](https://github.com/getmoto/moto) | `5.1.4` | `5.1.20` | | [mypy](https://github.com/python/mypy) | `1.15.0` | `1.19.1` | | [mypy-boto3-s3](https://github.com/youtype/mypy_boto3_builder) | `1.38.0` | `1.42.21` | | [packaging](https://github.com/pypa/packaging) | `25.0` | `26.0` | | [pycparser](https://github.com/eliben/pycparser) | `2.22` | `3.0` | | [pytest](https://github.com/pytest-dev/pytest) | `8.3.5` | `9.0.2` | | [pytest-mock](https://github.com/pytest-dev/pytest-mock) | `3.14.0` | `3.15.1` | | [responses](https://github.com/getsentry/responses) | `0.25.7` | `0.25.8` | | [ruff](https://github.com/astral-sh/ruff) | `0.11.10` | `0.14.14` | | [types-awscrt](https://github.com/youtype/types-awscrt) | `0.27.2` | `0.31.1` | | [types-requests](https://github.com/typeshed-internal/stub_uploader) | `2.32.0.20250515` | `2.32.4.20260107` | | [types-s3transfer](https://github.com/youtype/types-s3transfer) | `0.12.0` | `0.16.0` | | [typing-extensions](https://github.com/python/typing_extensions) | `4.13.2` | `4.15.0` | | [werkzeug](https://github.com/pallets/werkzeug) | `3.1.3` | `3.1.5` | | [xmltodict](https://github.com/martinblech/xmltodict) | `0.14.2` | `1.0.2` | | [alabaster](https://github.com/sphinx-doc/alabaster) | `0.7.16` | `1.0.0` | | [anyio](https://github.com/agronholm/anyio) | `4.9.0` | `4.12.1` | | [beautifulsoup4](https://www.crummy.com/software/BeautifulSoup/bs4/) | `4.13.4` | `4.14.3` | | [cachecontrol](https://github.com/psf/cachecontrol) | `0.14.3` | `0.14.4` | | [click](https://github.com/pallets/click) | `8.2.0` | `8.3.1` | | [contourpy](https://github.com/contourpy/contourpy) | `1.3.2` | `1.3.3` | | [filelock](https://github.com/tox-dev/py-filelock) | `3.18.0` | `3.20.3` | | [fonttools](https://github.com/fonttools/fonttools) | `4.58.0` | `4.61.1` | | [furo](https://github.com/pradyunsg/furo) | `2024.8.6` | `2025.12.19` | | [kiwisolver](https://github.com/nucleic/kiwi) | `1.4.8` | `1.4.9` | | [matplotlib](https://github.com/matplotlib/matplotlib) | `3.10.3` | `3.10.8` | | [mdit-py-plugins](https://github.com/executablebooks/mdit-py-plugins) | `0.4.2` | `0.5.0` | | [more-itertools](https://github.com/more-itertools/more-itertools) | `10.7.0` | `10.8.0` | | [msgpack](https://github.com/msgpack/msgpack-python) | `1.1.0` | `1.1.2` | | [myst-parser](https://github.com/executablebooks/MyST-Parser) | `4.0.1` | `5.0.0` | | [pillow](https://github.com/python-pillow/Pillow) | `11.2.1` | `12.1.0` | | [platformdirs](https://github.com/tox-dev/platformdirs) | `4.3.8` | `4.5.1` | | [pyparsing](https://github.com/pyparsing/pyparsing) | `3.2.3` | `3.3.2` | | ruamel-yaml | `0.18.10` | `0.19.1` | | ruamel-yaml-clib | `0.2.12` | `0.2.15` | | [soupsieve](https://github.com/facelessuser/soupsieve) | `2.7` | `2.8.3` | | [sphinx](https://github.com/sphinx-doc/sphinx) | `7.3.7` | `9.0.4` | | [sphinx-autobuild](https://github.com/sphinx-doc/sphinx-autobuild) | `2024.10.3` | `2025.8.25` | | [sphinx-autodoc-typehints](https://github.com/tox-dev/sphinx-autodoc-typehints) | `2.3.0` | `3.6.1` | | [sphinx-jinja2-compat](https://github.com/sphinx-toolbox/sphinx-jinja2-compat) | `0.3.0` | `0.4.1` | | [sphinx-prompt](https://github.com/sbrunner/sphinx-prompt) | `1.8.0` | `1.10.2` | | [sphinx-tabs](https://github.com/executablebooks/sphinx-tabs) | `3.4.5` | `3.4.7` | | [sphinx-toolbox](https://github.com/sphinx-toolbox/sphinx-toolbox) | `4.0.0` | `4.1.2` | | [sphinxext-opengraph](https://github.com/sphinx-doc/sphinxext-opengraph) | `0.10.0` | `0.13.0` | | [starlette](https://github.com/Kludex/starlette) | `0.46.2` | `0.52.1` | | [uvicorn](https://github.com/Kludex/uvicorn) | `0.34.2` | `0.40.0` | | [watchfiles](https://github.com/samuelcolvin/watchfiles) | `1.0.5` | `1.1.1` | | [websockets](https://github.com/python-websockets/websockets) | `15.0.1` | `16.0` | Updates `awscli` from 1.40.17 to 1.44.24 - [Release notes](https://github.com/aws/aws-cli/releases) - [Commits](aws/aws-cli@1.40.17...1.44.24) Updates `polars` from 1.28.1 to 1.37.1 - [Release notes](https://github.com/pola-rs/polars/releases) - [Commits](pola-rs/polars@py-1.28.1...py-1.37.1) Updates `requests` from 2.32.3 to 2.32.5 - [Release notes](https://github.com/psf/requests/releases) - [Changelog](https://github.com/psf/requests/blob/main/HISTORY.md) - [Commits](psf/requests@v2.32.3...v2.32.5) Updates `biopython` from 1.85 to 1.86 - [Changelog](https://github.com/biopython/biopython/blob/master/NEWS.rst) - [Commits](https://github.com/biopython/biopython/commits) Updates `boto3` from 1.38.18 to 1.42.34 - [Release notes](https://github.com/boto/boto3/releases) - [Commits](boto/boto3@1.38.18...1.42.34) Updates `botocore` from 1.38.18 to 1.42.34 - [Commits](boto/botocore@1.38.18...1.42.34) Updates `certifi` from 2025.4.26 to 2026.1.4 - [Commits](certifi/python-certifi@2025.04.26...2026.01.04) Updates `charset-normalizer` from 3.4.2 to 3.4.4 - [Release notes](https://github.com/jawah/charset_normalizer/releases) - [Changelog](https://github.com/jawah/charset_normalizer/blob/master/CHANGELOG.md) - [Commits](jawah/charset_normalizer@3.4.2...3.4.4) Updates `cloudpathlib` from 0.21.1 to 0.23.0 - [Release notes](https://github.com/drivendataorg/cloudpathlib/releases) - [Changelog](https://github.com/drivendataorg/cloudpathlib/blob/master/HISTORY.md) - [Commits](drivendataorg/cloudpathlib@v0.21.1...v0.23.0) Updates `docutils` from 0.19 to 0.22.4 - [Changelog](https://github.com/readthedocs/recommonmark/blob/master/CHANGELOG.md) - [Commits](https://github.com/rtfd/recommonmark/commits) Updates `idna` from 3.10 to 3.11 - [Release notes](https://github.com/kjd/idna/releases) - [Changelog](https://github.com/kjd/idna/blob/master/HISTORY.rst) - [Commits](kjd/idna@v3.10...v3.11) Updates `jellyfish` from 1.2.0 to 1.2.1 Updates `jmespath` from 1.0.1 to 1.1.0 - [Changelog](https://github.com/jmespath/jmespath.py/blob/develop/CHANGELOG.rst) - [Commits](jmespath/jmespath.py@1.0.1...1.1.0) Updates `markdown-it-py` from 3.0.0 to 4.0.0 - [Release notes](https://github.com/executablebooks/markdown-it-py/releases) - [Changelog](https://github.com/executablebooks/markdown-it-py/blob/master/CHANGELOG.md) - [Commits](executablebooks/markdown-it-py@v3.0.0...v4.0.0) Updates `numpy` from 2.2.5 to 2.4.1 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](numpy/numpy@v2.2.5...v2.4.1) Updates `pandas` from 2.2.3 to 3.0.0 - [Release notes](https://github.com/pandas-dev/pandas/releases) - [Commits](pandas-dev/pandas@v2.2.3...v3.0.0) Updates `pyarrow` from 20.0.0 to 23.0.0 - [Release notes](https://github.com/apache/arrow/releases) - [Commits](apache/arrow@apache-arrow-20.0.0...apache-arrow-23.0.0) Updates `pyasn1` from 0.6.1 to 0.6.2 - [Release notes](https://github.com/pyasn1/pyasn1/releases) - [Changelog](https://github.com/pyasn1/pyasn1/blob/main/CHANGES.rst) - [Commits](pyasn1/pyasn1@v0.6.1...v0.6.2) Updates `pygments` from 2.19.1 to 2.19.2 - [Release notes](https://github.com/pygments/pygments/releases) - [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES) - [Commits](pygments/pygments@2.19.1...2.19.2) Updates `pyyaml` from 6.0.2 to 6.0.3 - [Release notes](https://github.com/yaml/pyyaml/releases) - [Changelog](https://github.com/yaml/pyyaml/blob/6.0.3/CHANGES) - [Commits](yaml/pyyaml@6.0.2...6.0.3) Updates `rich` from 14.0.0 to 14.3.1 - [Release notes](https://github.com/Textualize/rich/releases) - [Changelog](https://github.com/Textualize/rich/blob/master/CHANGELOG.md) - [Commits](Textualize/rich@v14.0.0...v14.3.1) Updates `rsa` from 4.7.2 to 4.9.1 - [Changelog](https://github.com/sybrenstuvel/python-rsa/blob/main/CHANGELOG.md) - [Commits](https://github.com/sybrenstuvel/python-rsa/commits) Updates `s3transfer` from 0.12.0 to 0.16.0 - [Changelog](https://github.com/boto/s3transfer/blob/develop/CHANGELOG.rst) - [Commits](boto/s3transfer@0.12.0...0.16.0) Updates `structlog` from 25.3.0 to 25.5.0 - [Release notes](https://github.com/hynek/structlog/releases) - [Changelog](https://github.com/hynek/structlog/blob/main/CHANGELOG.md) - [Commits](hynek/structlog@25.3.0...25.5.0) Updates `tzdata` from 2025.2 to 2025.3 - [Release notes](https://github.com/python/tzdata/releases) - [Changelog](https://github.com/python/tzdata/blob/master/NEWS.md) - [Commits](python/tzdata@2025.2...2025.3) Updates `urllib3` from 2.4.0 to 2.6.3 - [Release notes](https://github.com/urllib3/urllib3/releases) - [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst) - [Commits](urllib3/urllib3@2.4.0...2.6.3) Updates `zstandard` from 0.23.0 to 0.25.0 - [Release notes](https://github.com/indygreg/python-zstandard/releases) - [Changelog](https://github.com/indygreg/python-zstandard/blob/main/docs/news.rst) - [Commits](indygreg/python-zstandard@0.23.0...0.25.0) Updates `boto3-stubs` from 1.38.18 to 1.42.34 - [Release notes](https://github.com/youtype/mypy_boto3_builder/releases) - [Commits](https://github.com/youtype/mypy_boto3_builder/commits) Updates `botocore-stubs` from 1.38.18 to 1.42.34 - [Release notes](https://github.com/youtype/botocore-stubs/releases) - [Commits](https://github.com/youtype/botocore-stubs/commits) Updates `cffi` from 1.17.1 to 2.0.0 - [Release notes](https://github.com/python-cffi/cffi/releases) - [Commits](python-cffi/cffi@v1.17.1...v2.0.0) Updates `coverage` from 7.8.0 to 7.13.2 - [Release notes](https://github.com/coveragepy/coveragepy/releases) - [Changelog](https://github.com/coveragepy/coveragepy/blob/main/CHANGES.rst) - [Commits](coveragepy/coveragepy@7.8.0...7.13.2) Updates `cryptography` from 44.0.3 to 46.0.3 - [Changelog](https://github.com/pyca/cryptography/blob/main/CHANGELOG.rst) - [Commits](pyca/cryptography@44.0.3...46.0.3) Updates `freezegun` from 1.5.1 to 1.5.5 - [Release notes](https://github.com/spulec/freezegun/releases) - [Changelog](https://github.com/spulec/freezegun/blob/master/CHANGELOG) - [Commits](spulec/freezegun@1.5.1...1.5.5) Updates `iniconfig` from 2.1.0 to 2.3.0 - [Release notes](https://github.com/pytest-dev/iniconfig/releases) - [Changelog](https://github.com/pytest-dev/iniconfig/blob/main/CHANGELOG) - [Commits](pytest-dev/iniconfig@v2.1.0...v2.3.0) Updates `markupsafe` from 3.0.2 to 3.0.3 - [Release notes](https://github.com/pallets/markupsafe/releases) - [Changelog](https://github.com/pallets/markupsafe/blob/main/CHANGES.rst) - [Commits](pallets/markupsafe@3.0.2...3.0.3) Updates `moto` from 5.1.4 to 5.1.20 - [Release notes](https://github.com/getmoto/moto/releases) - [Changelog](https://github.com/getmoto/moto/blob/master/CHANGELOG.md) - [Commits](getmoto/moto@5.1.4...5.1.20) Updates `mypy` from 1.15.0 to 1.19.1 - [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md) - [Commits](python/mypy@v1.15.0...v1.19.1) Updates `mypy-boto3-s3` from 1.38.0 to 1.42.21 - [Release notes](https://github.com/youtype/mypy_boto3_builder/releases) - [Commits](https://github.com/youtype/mypy_boto3_builder/commits) Updates `packaging` from 25.0 to 26.0 - [Release notes](https://github.com/pypa/packaging/releases) - [Changelog](https://github.com/pypa/packaging/blob/main/CHANGELOG.rst) - [Commits](pypa/packaging@25.0...26.0) Updates `pycparser` from 2.22 to 3.0 - [Release notes](https://github.com/eliben/pycparser/releases) - [Commits](eliben/pycparser@release_v2.22...release_v3.00) Updates `pytest` from 8.3.5 to 9.0.2 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](pytest-dev/pytest@8.3.5...9.0.2) Updates `pytest-mock` from 3.14.0 to 3.15.1 - [Release notes](https://github.com/pytest-dev/pytest-mock/releases) - [Changelog](https://github.com/pytest-dev/pytest-mock/blob/main/CHANGELOG.rst) - [Commits](pytest-dev/pytest-mock@v3.14.0...v3.15.1) Updates `responses` from 0.25.7 to 0.25.8 - [Release notes](https://github.com/getsentry/responses/releases) - [Changelog](https://github.com/getsentry/responses/blob/master/CHANGES) - [Commits](getsentry/responses@0.25.7...0.25.8) Updates `ruff` from 0.11.10 to 0.14.14 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.11.10...0.14.14) Updates `types-awscrt` from 0.27.2 to 0.31.1 - [Release notes](https://github.com/youtype/types-awscrt/releases) - [Commits](https://github.com/youtype/types-awscrt/commits) Updates `types-requests` from 2.32.0.20250515 to 2.32.4.20260107 - [Commits](https://github.com/typeshed-internal/stub_uploader/commits) Updates `types-s3transfer` from 0.12.0 to 0.16.0 - [Release notes](https://github.com/youtype/types-s3transfer/releases) - [Commits](https://github.com/youtype/types-s3transfer/commits) Updates `typing-extensions` from 4.13.2 to 4.15.0 - [Release notes](https://github.com/python/typing_extensions/releases) - [Changelog](https://github.com/python/typing_extensions/blob/main/CHANGELOG.md) - [Commits](python/typing_extensions@4.13.2...4.15.0) Updates `werkzeug` from 3.1.3 to 3.1.5 - [Release notes](https://github.com/pallets/werkzeug/releases) - [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst) - [Commits](pallets/werkzeug@3.1.3...3.1.5) Updates `xmltodict` from 0.14.2 to 1.0.2 - [Release notes](https://github.com/martinblech/xmltodict/releases) - [Changelog](https://github.com/martinblech/xmltodict/blob/master/CHANGELOG.md) - [Commits](martinblech/xmltodict@v0.14.2...v1.0.2) Updates `alabaster` from 0.7.16 to 1.0.0 - [Release notes](https://github.com/sphinx-doc/alabaster/releases) - [Changelog](https://github.com/sphinx-doc/alabaster/blob/master/docs/changelog.rst) - [Commits](sphinx-doc/alabaster@0.7.16...1.0.0) Updates `anyio` from 4.9.0 to 4.12.1 - [Release notes](https://github.com/agronholm/anyio/releases) - [Commits](agronholm/anyio@4.9.0...4.12.1) Updates `beautifulsoup4` from 4.13.4 to 4.14.3 Updates `cachecontrol` from 0.14.3 to 0.14.4 - [Release notes](https://github.com/psf/cachecontrol/releases) - [Changelog](https://github.com/psf/cachecontrol/blob/master/docs/release_notes.rst) - [Commits](psf/cachecontrol@v0.14.3...v0.14.4) Updates `click` from 8.2.0 to 8.3.1 - [Release notes](https://github.com/pallets/click/releases) - [Changelog](https://github.com/pallets/click/blob/main/CHANGES.rst) - [Commits](pallets/click@8.2.0...8.3.1) Updates `contourpy` from 1.3.2 to 1.3.3 - [Release notes](https://github.com/contourpy/contourpy/releases) - [Changelog](https://github.com/contourpy/contourpy/blob/main/docs/changelog.rst) - [Commits](contourpy/contourpy@v1.3.2...v1.3.3) Updates `filelock` from 3.18.0 to 3.20.3 - [Release notes](https://github.com/tox-dev/py-filelock/releases) - [Changelog](https://github.com/tox-dev/filelock/blob/main/docs/changelog.rst) - [Commits](tox-dev/filelock@3.18.0...3.20.3) Updates `fonttools` from 4.58.0 to 4.61.1 - [Release notes](https://github.com/fonttools/fonttools/releases) - [Changelog](https://github.com/fonttools/fonttools/blob/main/NEWS.rst) - [Commits](fonttools/fonttools@4.58.0...4.61.1) Updates `furo` from 2024.8.6 to 2025.12.19 - [Release notes](https://github.com/pradyunsg/furo/releases) - [Changelog](https://github.com/pradyunsg/furo/blob/main/docs/changelog.md) - [Commits](pradyunsg/furo@2024.08.06...2025.12.19) Updates `kiwisolver` from 1.4.8 to 1.4.9 - [Release notes](https://github.com/nucleic/kiwi/releases) - [Changelog](https://github.com/nucleic/kiwi/blob/main/releasenotes.rst) - [Commits](nucleic/kiwi@1.4.8...1.4.9) Updates `matplotlib` from 3.10.3 to 3.10.8 - [Release notes](https://github.com/matplotlib/matplotlib/releases) - [Commits](matplotlib/matplotlib@v3.10.3...v3.10.8) Updates `mdit-py-plugins` from 0.4.2 to 0.5.0 - [Release notes](https://github.com/executablebooks/mdit-py-plugins/releases) - [Changelog](https://github.com/executablebooks/mdit-py-plugins/blob/master/CHANGELOG.md) - [Commits](executablebooks/mdit-py-plugins@v0.4.2...v0.5.0) Updates `more-itertools` from 10.7.0 to 10.8.0 - [Release notes](https://github.com/more-itertools/more-itertools/releases) - [Commits](more-itertools/more-itertools@v10.7.0...v10.8.0) Updates `msgpack` from 1.1.0 to 1.1.2 - [Release notes](https://github.com/msgpack/msgpack-python/releases) - [Changelog](https://github.com/msgpack/msgpack-python/blob/main/ChangeLog.rst) - [Commits](msgpack/msgpack-python@v1.1.0...v1.1.2) Updates `myst-parser` from 4.0.1 to 5.0.0 - [Release notes](https://github.com/executablebooks/MyST-Parser/releases) - [Changelog](https://github.com/executablebooks/MyST-Parser/blob/master/CHANGELOG.md) - [Commits](executablebooks/MyST-Parser@v4.0.1...v5.0.0) Updates `pillow` from 11.2.1 to 12.1.0 - [Release notes](https://github.com/python-pillow/Pillow/releases) - [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst) - [Commits](python-pillow/Pillow@11.2.1...12.1.0) Updates `platformdirs` from 4.3.8 to 4.5.1 - [Release notes](https://github.com/tox-dev/platformdirs/releases) - [Changelog](https://github.com/tox-dev/platformdirs/blob/main/CHANGES.rst) - [Commits](tox-dev/platformdirs@4.3.8...4.5.1) Updates `pyparsing` from 3.2.3 to 3.3.2 - [Release notes](https://github.com/pyparsing/pyparsing/releases) - [Changelog](https://github.com/pyparsing/pyparsing/blob/master/CHANGES) - [Commits](pyparsing/pyparsing@3.2.3...3.3.2) Updates `ruamel-yaml` from 0.18.10 to 0.19.1 Updates `ruamel-yaml-clib` from 0.2.12 to 0.2.15 Updates `soupsieve` from 2.7 to 2.8.3 - [Release notes](https://github.com/facelessuser/soupsieve/releases) - [Commits](facelessuser/soupsieve@2.7...2.8.3) Updates `sphinx` from 7.3.7 to 9.0.4 - [Release notes](https://github.com/sphinx-doc/sphinx/releases) - [Changelog](https://github.com/sphinx-doc/sphinx/blob/v9.0.4/CHANGES.rst) - [Commits](sphinx-doc/sphinx@v7.3.7...v9.0.4) Updates `sphinx-autobuild` from 2024.10.3 to 2025.8.25 - [Release notes](https://github.com/sphinx-doc/sphinx-autobuild/releases) - [Changelog](https://github.com/sphinx-doc/sphinx-autobuild/blob/main/NEWS.rst) - [Commits](sphinx-doc/sphinx-autobuild@2024.10.03...2025.08.25) Updates `sphinx-autodoc-typehints` from 2.3.0 to 3.6.1 - [Release notes](https://github.com/tox-dev/sphinx-autodoc-typehints/releases) - [Commits](tox-dev/sphinx-autodoc-typehints@2.3.0...3.6.1) Updates `sphinx-jinja2-compat` from 0.3.0 to 0.4.1 - [Release notes](https://github.com/sphinx-toolbox/sphinx-jinja2-compat/releases) - [Commits](sphinx-toolbox/sphinx-jinja2-compat@v0.3.0...v0.4.1) Updates `sphinx-prompt` from 1.8.0 to 1.10.2 - [Release notes](https://github.com/sbrunner/sphinx-prompt/releases) - [Commits](sbrunner/sphinx-prompt@1.8.0...1.10.2) Updates `sphinx-tabs` from 3.4.5 to 3.4.7 - [Release notes](https://github.com/executablebooks/sphinx-tabs/releases) - [Changelog](https://github.com/executablebooks/sphinx-tabs/blob/master/CHANGELOG.md) - [Commits](executablebooks/sphinx-tabs@v3.4.5...v3.4.7) Updates `sphinx-toolbox` from 4.0.0 to 4.1.2 - [Release notes](https://github.com/sphinx-toolbox/sphinx-toolbox/releases) - [Changelog](https://github.com/sphinx-toolbox/sphinx-toolbox/blob/master/doc-source/changelog.rst) - [Commits](sphinx-toolbox/sphinx-toolbox@v4.0.0...v4.1.2) Updates `sphinxext-opengraph` from 0.10.0 to 0.13.0 - [Release notes](https://github.com/sphinx-doc/sphinxext-opengraph/releases) - [Commits](sphinx-doc/sphinxext-opengraph@v0.10.0...v0.13.0) Updates `starlette` from 0.46.2 to 0.52.1 - [Release notes](https://github.com/Kludex/starlette/releases) - [Changelog](https://github.com/Kludex/starlette/blob/main/docs/release-notes.md) - [Commits](Kludex/starlette@0.46.2...0.52.1) Updates `uvicorn` from 0.34.2 to 0.40.0 - [Release notes](https://github.com/Kludex/uvicorn/releases) - [Changelog](https://github.com/Kludex/uvicorn/blob/main/docs/release-notes.md) - [Commits](Kludex/uvicorn@0.34.2...0.40.0) Updates `watchfiles` from 1.0.5 to 1.1.1 - [Release notes](https://github.com/samuelcolvin/watchfiles/releases) - [Commits](samuelcolvin/watchfiles@v1.0.5...v1.1.1) Updates `websockets` from 15.0.1 to 16.0 - [Release notes](https://github.com/python-websockets/websockets/releases) - [Commits](python-websockets/websockets@15.0.1...16.0) --- updated-dependencies: - dependency-name: awscli dependency-version: 1.44.24 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: polars dependency-version: 1.37.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: requests dependency-version: 2.32.5 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: biopython dependency-version: '1.86' dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: boto3 dependency-version: 1.42.34 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: botocore dependency-version: 1.42.34 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: certifi dependency-version: 2026.1.4 dependency-type: direct:production update-type: version-update:semver-major dependency-group: py-updates - dependency-name: charset-normalizer dependency-version: 3.4.4 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: cloudpathlib dependency-version: 0.23.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: docutils dependency-version: 0.22.4 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: idna dependency-version: '3.11' dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: jellyfish dependency-version: 1.2.1 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: jmespath dependency-version: 1.1.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: markdown-it-py dependency-version: 4.0.0 dependency-type: direct:production update-type: version-update:semver-major dependency-group: py-updates - dependency-name: numpy dependency-version: 2.4.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: pandas dependency-version: 3.0.0 dependency-type: direct:production update-type: version-update:semver-major dependency-group: py-updates - dependency-name: pyarrow dependency-version: 23.0.0 dependency-type: direct:production update-type: version-update:semver-major dependency-group: py-updates - dependency-name: pyasn1 dependency-version: 0.6.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: pygments dependency-version: 2.19.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: pyyaml dependency-version: 6.0.3 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: rich dependency-version: 14.3.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: rsa dependency-version: 4.9.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: s3transfer dependency-version: 0.16.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: structlog dependency-version: 25.5.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: tzdata dependency-version: '2025.3' dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: urllib3 dependency-version: 2.6.3 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: zstandard dependency-version: 0.25.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: boto3-stubs dependency-version: 1.42.34 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: botocore-stubs dependency-version: 1.42.34 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: cffi dependency-version: 2.0.0 dependency-type: direct:development update-type: version-update:semver-major dependency-group: py-updates - dependency-name: coverage dependency-version: 7.13.2 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: cryptography dependency-version: 46.0.3 dependency-type: direct:development update-type: version-update:semver-major dependency-group: py-updates - dependency-name: freezegun dependency-version: 1.5.5 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: iniconfig dependency-version: 2.3.0 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: markupsafe dependency-version: 3.0.3 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: moto dependency-version: 5.1.20 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: mypy dependency-version: 1.19.1 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: mypy-boto3-s3 dependency-version: 1.42.21 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: packaging dependency-version: '26.0' dependency-type: direct:production update-type: version-update:semver-major dependency-group: py-updates - dependency-name: pycparser dependency-version: '3.0' dependency-type: direct:development update-type: version-update:semver-major dependency-group: py-updates - dependency-name: pytest dependency-version: 9.0.2 dependency-type: direct:development update-type: version-update:semver-major dependency-group: py-updates - dependency-name: pytest-mock dependency-version: 3.15.1 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: responses dependency-version: 0.25.8 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: ruff dependency-version: 0.14.14 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: types-awscrt dependency-version: 0.31.1 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: types-requests dependency-version: 2.32.4.20260107 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: types-s3transfer dependency-version: 0.16.0 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: typing-extensions dependency-version: 4.15.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: werkzeug dependency-version: 3.1.5 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: xmltodict dependency-version: 1.0.2 dependency-type: direct:development update-type: version-update:semver-major dependency-group: py-updates - dependency-name: alabaster dependency-version: 1.0.0 dependency-type: direct:production update-type: version-update:semver-major dependency-group: py-updates - dependency-name: anyio dependency-version: 4.12.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: beautifulsoup4 dependency-version: 4.14.3 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: cachecontrol dependency-version: 0.14.4 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: click dependency-version: 8.3.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: contourpy dependency-version: 1.3.3 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: filelock dependency-version: 3.20.3 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: fonttools dependency-version: 4.61.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: furo dependency-version: 2025.12.19 dependency-type: direct:production update-type: version-update:semver-major dependency-group: py-updates - dependency-name: kiwisolver dependency-version: 1.4.9 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: matplotlib dependency-version: 3.10.8 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: mdit-py-plugins dependency-version: 0.5.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: more-itertools dependency-version: 10.8.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: msgpack dependency-version: 1.1.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: myst-parser dependency-version: 5.0.0 dependency-type: direct:production update-type: version-update:semver-major dependency-group: py-updates - dependency-name: pillow dependency-version: 12.1.0 dependency-type: direct:production update-type: version-update:semver-major dependency-group: py-updates - dependency-name: platformdirs dependency-version: 4.5.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: pyparsing dependency-version: 3.3.2 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: ruamel-yaml dependency-version: 0.19.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: ruamel-yaml-clib dependency-version: 0.2.15 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: soupsieve dependency-version: 2.8.3 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: sphinx dependency-version: 9.0.4 dependency-type: direct:production update-type: version-update:semver-major dependency-group: py-updates - dependency-name: sphinx-autobuild dependency-version: 2025.8.25 dependency-type: direct:production update-type: version-update:semver-major dependency-group: py-updates - dependency-name: sphinx-autodoc-typehints dependency-version: 3.6.1 dependency-type: direct:production update-type: version-update:semver-major dependency-group: py-updates - dependency-name: sphinx-jinja2-compat dependency-version: 0.4.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: sphinx-prompt dependency-version: 1.10.2 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: sphinx-tabs dependency-version: 3.4.7 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: py-updates - dependency-name: sphinx-toolbox dependency-version: 4.1.2 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: sphinxext-opengraph dependency-version: 0.13.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: starlette dependency-version: 0.52.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: uvicorn dependency-version: 0.40.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: watchfiles dependency-version: 1.1.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: py-updates - dependency-name: websockets dependency-version: '16.0' dependency-type: direct:production update-type: version-update:semver-major dependency-group: py-updates ... Signed-off-by: dependabot[bot] <support@github.com>

dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update python code labels Jan 26, 2026

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Bump the py-updates group across 1 directory with 83 updates #190

Bump the py-updates group across 1 directory with 83 updates #190

Uh oh!

dependabot bot commented on behalf of github Jan 26, 2026

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

1 participant

Bump the py-updates group across 1 directory with 83 updates #190

Are you sure you want to change the base?

Bump the py-updates group across 1 directory with 83 updates #190

Uh oh!

Conversation

dependabot bot commented on behalf of github Jan 26, 2026

Python Polars 1.37.1

🚀 Performance improvements

🐞 Bug fixes

📖 Documentation

🛠️ Other improvements

Python Polars 1.37.0

🚀 Performance improvements

✨ Enhancements

v2.32.5

2.32.5 (2025-08-18)

v2.32.4

2.32.4 (2025-06-10)

2.32.5 (2025-08-18)

2.32.4 (2025-06-10)

28 October 2025: Biopython 1.86

Version 3.4.4

3.4.4 (2025-10-13)

Changed

Removed

Misc

Version 3.4.3

3.4.3 (2025-08-09)

Changed

Added

Fixed

Misc

3.4.4 (2025-10-13)

Changed

Removed

Misc

3.4.3 (2025-08-09)

Changed

Added

Fixed

Misc

v0.23.0

v0.22.0

v0.23.0 (2025-10-07)

v0.22.0 (2025-08-29)

1.1.0

v4.0.0

What's Changed

Upgrades

Improvements

Bug fixes

Maintenance

Documentation

4.0.0 - 2024-08-10

2.4.1 (Jan 10, 2026)

NumPy 2.4.1 Release Notes

Contributors

Pull requests merged

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

1 participant