A Claude Code plugin that automatically captures everything Claude does during your coding sessions, compresses it with AI (using Claude's agent-sdk), and injects relevant context back into future …

Git but for genomes

Gas Town - multi-agent workspace manager

cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequence.

Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye

R library to run Ollama language models

Pangenome analysis using random forests

Phylogenetic orthology inference for comparative genomics

An agentic skills framework & software development methodology that works.

CLI tool for configuring and monitoring Claude Code

Fast, accurate construction of multiple sequence alignments from protein language embeddings

BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins

fficient reference-guided genome assembly from long reads

This is the software for FAst Marginal Epistasis test (FAME)

Explore GFF files with an AI agent version of the gffutils Python library.

A tool for pangenome graph-based phased diploid genome inference.

A snakemake workflow for training neural posterior estimators on population genetic data

Prior-Oblivious Length Estimation in Genealogies with Oriented Network

VariantFormer: A hierarchical transformer integrating DNA sequences with genetic variations

Rapid alignment-free method for introgression screening and GWAS using k-mer profiles

An R package and Colab notebook for functional score calibration to ACMG/AMP evidence strength

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

Paper2Agent is a multi-agent AI system that automatically transforms research papers into interactive AI agents with minimal human input.

A tool for sniffing out the differences in vari-Ants

Post-verkko graph and assembly curation in Python.