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BLEEP state-of-the-art model adapted for SPARED datasets

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Spared_BLEEP

BLEEP state-of-the-art model adapted for SpaRED datasets

Environment set up

Create environment:

cd Spared_BLEEP
conda env create -f environment.yml -n bleep_spared
conda activate bleep_spared
pip install -r requirements.txt

Running the complete EGN framework (exemplar building + gene expression prediction)

python BLEEP_main.py --dataset [SpaRED_dataset_name] --lr [learning_rate]

We invite you to explore the arguments available and their description in utils.py in order to modify their values as needed.

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