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    8 repositories

    • differentialabundance

      Public
      Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
      Nextflow
      •
      MIT License
      •59•1•0•1•Updated Sep 20, 2024Sep 20, 2024

    • rnaseq

      Public
      RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
      Nextflow
      •
      MIT License
      •856•0•0•0•Updated Aug 9, 2024Aug 9, 2024

    • viralrecon

      Public
      Assembly and intrahost/low-frequency variant calling for viral samples
      Nextflow
      •
      MIT License
      •147•0•0•1•Updated May 29, 2024May 29, 2024

    • neodash

      Public
      NeoDash - a Dashboard Builder for Neo4j
      TypeScript
      •
      Apache License 2.0
      •181•0•0•0•Updated Apr 26, 2024Apr 26, 2024

    • swan_vis

      Public
      A Python library to visualize and analyze long-read transcriptomes
      Jupyter Notebook
      •
      MIT License
      •11•0•0•0•Updated Mar 13, 2024Mar 13, 2024

    • nf-test-datasets

      Public
      Test data to be used for automated testing with the nf-core pipelines
      MIT License
      •482•0•0•0•Updated Mar 13, 2024Mar 13, 2024

    • efficient-evolution

      Public
      Efficient evolution from protein language models
      Python
      •
      MIT License
      •60•0•0•0•Updated May 17, 2023May 17, 2023

    • rnasplice

      Public
      rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
      Nextflow
      •
      MIT License
      •37•0•0•1•Updated Nov 16, 2022Nov 16, 2022