TASK-5318 - Implement custom annotator to allow clients private files#695
Merged
jtarraga merged 8 commits intorelease-6.x.xfrom Sep 26, 2024
Merged
TASK-5318 - Implement custom annotator to allow clients private files#695jtarraga merged 8 commits intorelease-6.x.xfrom
jtarraga merged 8 commits intorelease-6.x.xfrom
Conversation
On branch TASK-5318 Changes to be committed: modified: cellbase-core/src/main/java/org/opencb/cellbase/core/exception/CellBaseException.java
…TASK-6427, #TASK-5318 On branch TASK-5318 Changes to be committed: modified: cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/CosmicIndexer.java new file: cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/CosmicIndexerCallback.java
…data, #TASK-6427, #TASK-5318 On branch TASK-5318 Changes to be committed: modified: cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/ClinVarIndexer.java modified: cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/ClinicalIndexer.java modified: cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/ClinicalVariantBuilder.java modified: cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/IARCTP53Indexer.java
…ASK-5318 On branch TASK-5318 Changes to be committed: modified: cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/ClinicalIndexer.java
jtarraga
changed the title
j-coll
changed the title
Member
j-coll
previously approved these changes
Aug 9, 2024
j-coll
approved these changes
Sep 26, 2024
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
3 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Implement custom annotator to allow clients private files, e.g., COSMIC annotation; so the COSMIC parser is moved to the package biodata-formats