This repository contains the data and code used in the paper "Descent from a common ancestor restricts exploration of protein sequence space".

Repository structure:

• README.md
• LICENSE
• environment.yml
• data/ - summary tables, small example data
• notebooks/ - Jupyter notebooks to reproduce all figures from summary tables
• params/ - run parameters for simulations
• src/ - all source code
• workflows/ - workflows the way they were run

Raw data can be found at Zenodo DOI:10.5281/zenodo.17623392 (https://zenodo.org/records/17623392). (description of the included files is in data/README.md)