morphSeq

Codebase designed to translate between single-cell transcriptomes images of embryonic development

Name		Name	Last commit message	Last commit date
Latest commit History 1,828 Commits
.analysis-venv		.analysis-venv
.claude		.claude
.venv		.venv
.vscode		.vscode
_Archive		_Archive
data_pipeline_output		data_pipeline_output
dev		dev
docs		docs
envs		envs
image_building/shared		image_building/shared
jupyter		jupyter
mathematica		mathematica
metadata		metadata
morphseq_vault		morphseq_vault
results		results
segmentation_sandbox		segmentation_sandbox
src		src
test_data		test_data
tests		tests
visualization		visualization
.DS_Store		.DS_Store
.gitignore		.gitignore
.pre-commit-config.yaml		.pre-commit-config.yaml
20260121_status_update.md		20260121_status_update.md
AGENTS.md		AGENTS.md
CLAUDE.md		CLAUDE.md
CONSOLIDATION_SUMMARY.md		CONSOLIDATION_SUMMARY.md
README.md		README.md
REFACTORING_SUMMARY.md		REFACTORING_SUMMARY.md
UOT_VIZ_CONSOLIDATION_SUMMARY.md		UOT_VIZ_CONSOLIDATION_SUMMARY.md
__init__.py		__init__.py
bambi_env_full.yml		bambi_env_full.yml
check_stale_data.py		check_stale_data.py
check_stale_summary.sh		check_stale_summary.sh
detect_mixed_staleness.py		detect_mixed_staleness.py
mask_test.png		mask_test.png
ns_basis.csv		ns_basis.csv
screenshot.png		screenshot.png
test.jpg		test.jpg
test2.jpg		test2.jpg
test_mask.png		test_mask.png

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