• Integrated GUI code into package (code)
• Added more functionalities such as zero shot PLM prediction (also for SSM landscape prediction) and possibility to run Hugging Face transformer (transformers) models purely offline if model are already cached

Added a binary Pyinstaller Windows executable (.exe) file for GUI running

• Switched from Tensorflow to PyTorch for DCA (and LLM) related tasks
• Added two LLM models (ESM1v and ProSST for hybrid modeling) next to GREMLIN

Always print full output file paths

Support for Python 3.12

fix: pmult predictions work now

Changes:

• Better looking plots
• Amino acid variant position assertion against wild-type sequence if input format AaPosAa, e.g., A123C
• Binary classification metric (Recall top 10%) implemented

Waiting for the official Ray release for Python 3.12 to upgrade to Python 3.12.