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enhancementNew feature or requestNew feature or request

Status: Open.

#423 In nf-core/mhcquant;

· wangjiawen2013 opened on Dec 15, 2025

result.pep.xml could not be found

questionFurther information is requestedFurther information is requested

Status: Open.

#422 In nf-core/mhcquant;

· EmaEtch opened on Dec 11, 2025

MS2Rescore config change to prevent crash on 16GB computer

questionFurther information is requestedFurther information is requested

Status: Open.

#421 In nf-core/mhcquant;

· rohitsuresh1407-cpu opened on Dec 1, 2025

DIA data and MHCII

questionFurther information is requestedFurther information is requested

Status: Open.

#420 In nf-core/mhcquant;

· wangjiawen2013 opened on Nov 21, 2025

How to speed up

questionFurther information is requestedFurther information is requested

Status: Open.

#418 In nf-core/mhcquant;

· wangjiawen2013 opened on Nov 20, 2025

<code>SUMMARIZE_RESULTS</code> process crashes if deeplc is not specified

bugSomething isn't workingSomething isn't working

Status: Open.

#416 In nf-core/mhcquant;

· Ngarciar24 opened on Oct 29, 2025

TDF2MZML throwing Cannot spread the type java.lang.Integer with value 1

bugSomething isn't workingSomething isn't working

Status: Open.

#414 In nf-core/mhcquant;

· jkneppers opened on Oct 22, 2025

Update docs with new subworkflows

Status: Open.

#398 In nf-core/mhcquant;

· jonasscheid opened on Sep 15, 2025

·  

3.2.0

Re-add optional vcf input for sample-specific database generation and search

enhancementNew feature or requestNew feature or request

Status: Open.

#377 In nf-core/mhcquant;

· jonasscheid opened on May 28, 2025

·  

3.2.0

Port local OpenMS modules to nf-core modules

enhancementNew feature or requestNew feature or request

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#296 In nf-core/mhcquant;

· jonasscheid opened on Dec 21, 2023

Remove writing out all peaks when using Ion Annotator

enhancementNew feature or requestNew feature or request

Status: Open.

#286 In nf-core/mhcquant;

· jonasscheid opened on Oct 8, 2023

·  

3.2.0

Add support for SDRF input

enhancementNew feature or requestNew feature or request

Status: Open.

#277 In nf-core/mhcquant;

· jonasscheid opened on Jul 25, 2023

·  

3.2.0