Search results

agglomerateByPrevalence introduces wrong relative abundances

Status: Open.

#791 In microbiome/mia;

· artur-sannikov opened on Nov 20, 2025

<code>verbose</code> argument for <code>transformAssay</code> (<code>.apply_pseudocount</code>) (and maybe other functions?)

Status: Open.

#788 In microbiome/mia;

· nr0cinu opened on Oct 22, 2025

Clarification: getDissimilarity overlap metric appears to measure similarity

Status: Open.

#787 In microbiome/mia;

· ShivangPB opened on Oct 22, 2025

update mia recipe and version to bioconda

Status: Open.

#785 In microbiome/mia;

· g-antonello opened on Oct 2, 2025

<code>ecodive</code>: A new, dependency-free package for diversity metrics (from <code>rbiom</code> dev)

Status: Open.

#783 In microbiome/mia;

· dansmith01 opened on Sep 23, 2025

Give warning when overwriting tables during normalization

Status: Open.

#782 In microbiome/mia;

· 0xMuluh opened on Sep 8, 2025

add miaTime to DESCRIPTION

Status: Open.

#771 In microbiome/mia;

· 0xMuluh opened on Sep 1, 2025

parseTaxonomy

Status: Open.

#769 In microbiome/mia;

· TuomasBorman opened on Aug 27, 2025

getTop(rank = "genus", ...)

Status: Open.

#768 In microbiome/mia;

· TuomasBorman opened on Aug 27, 2025

Ambiguous error message in internal agglomeration

Status: Open.

#767 In microbiome/mia;

· TuomasBorman opened on Aug 25, 2025

Allow method = "lmm" in mia::getCrossAssociation with parameter for random effects

Status: Open.

#765 In microbiome/mia;

· xec-cm opened on Aug 18, 2025

(db)RDA vs PERMANOVA

Status: Open.

#763 In microbiome/mia;

· antagomir opened on Aug 18, 2025