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.abundance_counts object not found in wrangling

Status: Open.

#826 In microbiome/OMA;

· artur-sannikov opened on Dec 5, 2025

<code>addMDS</code> drops smallest sample when <code>sample = min(colSums(assay(tse, "counts")))</code>

Status: Open.

#824 In microbiome/OMA;

· 0xMuluh opened on Nov 23, 2025

Improve rarefaction docs: move explanation earlier &amp; show <code>niter</code> usage for alpha/beta diversity

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#823 In microbiome/OMA;

· 0xMuluh opened on Nov 23, 2025

Confusion/Error on filtering out zero-variance features

Status: Open.

#822 In microbiome/OMA;

· raivo-otus opened on Nov 6, 2025

Clarification for IntegratedLearner preprocessing

Status: Open.

#817 In microbiome/OMA;

· 0xMuluh opened on Sep 30, 2025

Citations to open data resources

Status: Open.

#816 In microbiome/OMA;

· raivo-otus opened on Sep 30, 2025

Association chapter

Status: Open.

#815 In microbiome/OMA;

· antagomir opened on Sep 23, 2025

Chapter 18 overlap with network chapters

Status: Open.

#814 In microbiome/OMA;

· antagomir opened on Sep 23, 2025

Swap between altExps

Status: Open.

#811 In microbiome/OMA;

· RiboRings opened on Sep 18, 2025

mikropml update

Status: Open.

#803 In microbiome/OMA;

· TuomasBorman opened on Sep 11, 2025

Use US English

Status: Open.

#800 In microbiome/OMA;

· TuomasBorman opened on Sep 11, 2025

Referring packages

Status: Open.

#798 In microbiome/OMA;

· TuomasBorman opened on Sep 8, 2025