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job-ops: DevOps principles applied to job hunting. A self-hosted pipeline to track, analyze, and assist your application process
Rust implementation of Needleman-Wunsch & Smith-Waterman sequence alignment
Up to 100x faster strings for C, C++, CUDA, Python, Rust, Swift, JS, & Go, leveraging NEON, AVX2, AVX-512, SVE, GPGPU, & SWAR to accelerate search, hashing, sorting, edit distances, sketches, and m…
Fast and versatile tokenizer for language models, compatible with SentencePiece, Tokenizers, Tiktoken and more. Supports BPE, Unigram and WordPiece tokenization in JavaScript, Python and Rust.
Learned diffusion heuristics with GPU-accelerated search for short paths in large graphs.
A simplified implementation of DSSP algorithm for PyTorch and NumPy
A data modelling layer built on top of polars and pydantic
A fast TOML library for python implemented in rust.
🐍 Scan your Python dependencies for known security vulnerabilities with Rust-powered scanner
Awesome papers related to generative flow matching and its applications in bioinformatics.
Typer, build great CLIs. Easy to code. Based on Python type hints.
Simple scheduler for running jobs on GPUs
Portable file server with accelerated resumable uploads, dedup, WebDAV, SFTP, FTP, TFTP, zeroconf, media indexer, thumbnails++ all in one file
Nucleic acid folding and melting temperature calculation
LLM agents for working with the SRA and associated bioinformatics databases.
An efficient CLI to extract sequences from the SRA
A minimal copy fastq and fasta reader built for parallel support and paired end processing
A Python library for amortized Bayesian workflows using generative neural networks.
~anish • powered by https://github.com/anishathalye/dotbot 💾
It's a package for evaluation of predicted poses, right?
A generic framework for on-demand, incrementalized computation. Inspired by adapton, glimmer, and rustc's query system.
An implementation of ESM2 in Equinox+JAX