An interactive explorer for single-cell transcriptomics data

RNA-seq aligner

🦉 Data Versioning and ML Experiments

🐝 Awesome R and Python packages offering extended UI or server components for the web framework Shiny

Kraken taxonomic sequence classification system

Mummer alignment tool

Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation

Clustering cONtigs with COverage and ComposiTion

mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads

Windowed Adaptive Trimming for fastq files using quality

Julia package release bot

Data and code behind the articles and graphics at FiveThirtyEight

Discussion of issues related to the running of the UM Software Carpentry group

Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to…

🌐 Jekyll is a blog-aware static site generator in Ruby

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

Cross-platform Linux commands in ES6

Micro 612 genomics workshop

Useful bash one-liners for bioinformatics.