Experimental design and (multi-objective) bayesian optimization.

Supercharge Your Model Training

DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.

SD.Next: All-in-one WebUI for AI generative image and video creation

Library of deep learning models and datasets designed to make deep learning more accessible and accelerate ML research.

🤖 MetaboT 🍵 is an AI system that accelerates mass spectrometry-based metabolomics data mining.

PepTrust: A Probabilistic Framework for High-Confidence Peptide Identification

Janus-Series: Unified Multimodal Understanding and Generation Models

Reconstructing CGNs using single-cell RNA sequencing data

Inference and numerics for multi-hybrid AI model architectures

Genome modeling and design across all domains of life

You like pytorch? You like micrograd? You love tinygrad! ❤️

General tools for genomic analyses.

A collective list of free APIs

Codes and results from ONT dRNA benchmarking

lightweight, standalone C++ inference engine for Google's Gemma models.

📦 CMake's missing package manager. A small CMake script for setup-free, cross-platform, reproducible dependency management.

State-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastructure.

Minkowski Engine is an auto-diff neural network library for high-dimensional sparse tensors

List of Computer Science courses with video lectures.

a CLI parser

Modern C++ quantum computing library

LaTeX package and annotated examples for annotating equations using TikZ.

Dear ImGui: Bloat-free Graphical User interface for C++ with minimal dependencies

Pan-Genomic Matching Statistics

SARS-CoV-2 genome reconstruction for Illumina data in Nextflow

BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale

A deep learning-based tool to identify splice variants

Phylogenetic orthology inference for comparative genomics

Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.