Search results

Should BAM files be Tn5-shifted before using featureCounts after Genrich peak calling?

Status: Open.

#116 In jsh58/Genrich;

· wangbenwang123 opened on Mar 12, 2025

Genrich for ATAC-seq Analysis with Covariates

Status: Open.

#115 In jsh58/Genrich;

· dxkeac opened on Dec 13, 2024

ATAC-seq 0 peaks found

Status: Open.

#114 In jsh58/Genrich;

· chrishklee opened on Oct 31, 2024

citation for genrich

Status: Open.

#113 In jsh58/Genrich;

· LinearParadox opened on Sep 23, 2024

Specifying Custom hg19 Genome

Status: Open.

#112 In jsh58/Genrich;

· phoebe460 opened on Apr 5, 2024

interpretation of q value

Status: Open.

#111 In jsh58/Genrich;

· pengxin2019 opened on Feb 18, 2024

Poorly formatted SAM record error

Status: Open.

#108 In jsh58/Genrich;

· rotoke opened on Nov 20, 2023

CUT&TAG with Genrich

Status: Open.

#107 In jsh58/Genrich;

· sunta3iouxos opened on Oct 30, 2023

question: updating Genrich on bioconda - recent Genrich update (debug error SAM w/o sort-order)

Status: Open.

#102 In jsh58/Genrich;

· tamuanand opened on May 10, 2023

Citation

Status: Open.

#49 In jsh58/Genrich;

· radio1988 opened on Feb 15, 2020

Feature Request: new option -i and -I to complement -e and -E

Status: Open.

#40 In jsh58/Genrich;

· malcook opened on Nov 25, 2019