Declarative, type-safe command line argument parsers from dataclasses and attrs classes

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Python program creating geographical maps with pie charts in the center of

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

USB WiFi Adapter Information for Linux

Gene Set Enrichment Analysis in Python

A conda-forge distribution.

PyTorch version of Stable Baselines, reliable implementations of reinforcement learning algorithms.

A dictionary that allows attribute-style access.

Take output of mageck and drugz to produce interactive Dash charts.

Data-driven aggregation of ranked and unranked lists

A simple and efficient tool to parallelize Pandas operations on all available CPUs

Python version of CRISPRcleanR: An R package for unsupervised identification and correction of gene independent cell responses to CRISPR-cas9 targeting

Repository for "Multilayered VBC-score predicts sgRNAs that efficiently generate loss-of-function alleles" Michlits et al. Nature Methods 2020 Jun; 17: 708-716

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

DRUGZ software

Python3 teaching materials for basic introduction to Python (2 days)

Python3 teaching materials for data science (2 days)

Scripts for processing and predicting CRISPR/Cas9-generated mutations

pure python code for rank aggregation/voting

Official git repository for Biopython (originally converted from CVS)

Analysis package for processing counts from genome-wide CRISPR/Cas9 screens

phred quality conversion to and from float and log space