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1. PhyloCSFCandidateCodingRegions PhyloCSFCandidateCodingRegions Public

   The scripts in this git repository contain the main algorithms for computing PhyloCSF Candidate Coding Regions, as defined in "Discovery of protein-coding genes and exons by whole-genome PhyloCSF h…

   Python 3

2. PhyloCSF_PsiEmp PhyloCSF_PsiEmp Public

   This project contains python 2.7 software and data files for computing PhyloCSF-PsiEmp on Anopheles and Drosophila alignments. This is a comparative genomics method for determining whether a given …

   Python 1

3. ORBL_tools ORBL_tools Public

   ORBL tools for measuring evolutionary conservation and constraint of the "ORFness" of an ORF using a genomic alignment

   Python 1

4. ChromosomeMappings ChromosomeMappings Public

   Forked from dpryan79/ChromosomeMappings

   This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

5. kent kent Public

   Forked from ucscGenomeBrowser/kent

   UCSC Genome Browser source tree. Stable branch: "beta".

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