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1. COAL_PHYRE COAL_PHYRE Public

   Software to infer population size history and divergence times in a species tree from pairwise coalescence times

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2. ModifiedRMO ModifiedRMO Public

   Code to compute RMO scores in the presence of unordered mutations and correlated pathways

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3. STCov STCov Public

   Code implementing exact equations for pairwise coalescence time mean, variance, covariance, and shared branch length quantities.

   C++