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A shiny application to visualize MCscan result
ARG normalization by mapping to the ARO ontology.
Blazing-Fast Bioinformatic Operations on Python DataFrames
VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply …
Scalable and flexible workflow orchestration platform that seamlessly unifies data, ML and analytics stacks.
VCF Observer is a VCF file analysis, comparison, and visualization tool.
A proof of concept daisy-chaining Nextflow workflows
Nextflow runs monitoring and organisation UI
PyGWalker: Turn your dataframe into an interactive UI for visual analysis
create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
Script for generating snapshot assertions for nf-tests
Phylogenetic maximum representation sampling: choosing most representative strains or taxa
Miscellaneous Perl scripts from 20 years in microbial bioinformatics
A single cell transcriptomics pipeline for QC, integration and making the data presentable
SGPT is a command-line tool that provides a convenient way to interact with OpenAI models, enabling users to run queries, generate shell commands and produce code directly from the terminal.
Command line utility for manipulating Illumina-generated FASTQ files.
Visualise and analyse nanopore (ONT) raw signals
🌐 The Internet Computer! Free, Open-Source, and Self-Hostable.
Disty McMatrixface - compute a distance matrix from a core genome alignment file
Fast and accurately polish the genome generated by long reads.
RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches
Assort phage protein sequences into phamilies using MMseqs2
A lightweight, pure-Swift library for downloading and caching images from the web.