A list of interesting genome browser and genome visualization programs

Book about interpretable machine learning

📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria

Robust and reusable Executor for joblib

Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I

Functions, Data Sets and Vignettes to Aid in Learning Principal Components Analysis (PCA)

A Nextflow pipeline for multivariate GWAS using MANTA

Non-parametric, asymptotic P-value computation for multivariate linear models

Workshop materials for StanCon 2024 biodiversity monitoring course

Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA

alignment-free coverage calculation for metagenomic binning >100 times faster

Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc

Aligns short reads using dynamic seed size with strobemers

Intelligent Storage Acceleration Library

Making bioinformatics fun again

Anycat is a tool that tries to cat (print to stdout) a file while unpacking it with the appropriate decompression algorithm

Mobile Shell

Presentation-Ready Data Summary and Analytic Result Tables

Basic git course - Practice repository

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Tip and tricks for BAM files

Bioinformatics tool for Locus Visualisation

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Robs manual for the computational genomics and bioinformatics class.

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

Tool for visualising assemblies.

Successful Job Applications and Grants