processing_scripts

Python scripts for processing short read data sets in fastq format
Assumes data will come from EBI's ENA in many cases

Name		Name	Last commit message	Last commit date
Latest commit History 42 Commits
H99_pipeline.sh		H99_pipeline.sh
Heteroplasmy makefile.ipynb		Heteroplasmy makefile.ipynb
README.md		README.md
align_reads.py		align_reads.py
collect_reads.py		collect_reads.py
dist_hist.py		dist_hist.py
fetch_ebi_reads.py		fetch_ebi_reads.py
qual_trim.py		qual_trim.py
variant_call.py		variant_call.py

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