Set of pre- and post-processing scripts for PFLOTRAN

Using and IDE like PyCharm is recommended to keep things easy. It may be useful if you need to debug your scripts, or edit them.

Using PyCharm, you can follow the installation step and then run your scripts in PyFLOTRAN env automatically. Otherwise, you can follow the steps below to run PyFLOTRAN manually.

Configure the conda environment running

conda env create -f /config/conda_env.yml

Some examples of usage of PyFLOTRAN may be found inside templates folder. Use config.yaml to setup data sources and other variables.

In order to execute PyFLOTRAN, PyFLOTRAN conda env needs to be loaded.

conda activate PyFLOTRAN

Run the script and set the config file as argument. If the config file is not specified, ./config.yaml will be taken as default.

Example:

python templates\interpolate_top_BC\interpolate_BC.py templates\interpolate_top_BC\config.yaml