Explanation of what's in each folder:

R_functions: R functions that can be used to apply our model to data.

drafts: Manuscript drafts.

bioinfo: Raw data download and bioinformatic data processing for each data set. Not included in github repo because of storage limitations. Available upon request: darcyj@colorado.edu

moving_pix_analysis: Analysis of Caporaso et al. (2011) data

infant_gut_analysis: Analysis of Koenig et al. (2011) data

finnish_infants_analysis: Analysis of yassour et al. (2016) data