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Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
deeplearning.ai（吴恩达老师的深度学习课程笔记及资源）
The main repository for the development of the evolution game Thrive.
(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
CellProfiler tutorial pipelines and images
PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
The second version of the Kraken taxonomic sequence classification system
💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
Ultra-fast and memory-efficient (meta-)genome assembler
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, m…
本地部署chatglm生成并以语音回复你的bilibili直播弹幕 Use chatglm to generate and reply your bilibili live danmu with voice
ChatGLM-6B: An Open Bilingual Dialogue Language Model | 开源双语对话语言模型
Code for the ProteinMPNN paper
Batch effect adjustment based on negative binomial regression for RNA sequencing count data
A comprehensive, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data
🚂 Python API for Emma's Markov Model Algorithms 🚂
This package contains deep learning models and related scripts for RoseTTAFold
Open source code for AlphaFold 2.