The automation tower defense RTS

A standalone Java Decompiler GUI

OpenRefine is a free, open source power tool for working with messy data and improving it

Algorithms, 4th edition textbook code and libraries

Official code repository for GATK versions 4 and up

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

A quality control analysis tool for high throughput sequencing data

RTG Tools: Utilities for accurate VCF comparison and manipulation

GRIDSS: the Genomic Rearrangement IDentification Software Suite

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

Read trimming tool for Illumina NGS data.

Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

ABRA2