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AI agents running research on single-GPU nanochat training automatically
A collection of cheminformatics utility functions for use with marimo notebooks
ASHIGARU is a terminal-based interface & system powered by React & Ink that combines the power of modern web technologies with the efficiency of command-line interfaces. It features a complete wind…
An extremely fast Python type checker and language server, written in Rust.
A fully functional browser-based OS simulation with a custom window manager. Engineered to host nested applications and ranked as a top 100 all-time project on Hacker News.
A fully open source biomolecular structure prediction model based on AlphaFold3
This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.
Repository for the BoltzGen model
Potts model-based protein sequence design
Generates and scores synthetically tractable elaborations from fragment screens
Awesome papers related to generative flow matching and its applications in bioinformatics.
A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, including both the backbone and side chain.
A high-performance, GPU-accelerated library for key computational chemistry tasks, such as molecular similarity, conformer generation, and geometry relaxation.
CReM: chemically reasonable mutations framework
Automagically resolve the best structure for molecules across several databases from identifiers
A generalized computational framework for biomolecular modeling.
cuEquivariance is a math library that is a collective of low-level primitives and tensor ops to accelerate widely-used models, like DiffDock, MACE, Allegro and NEQUIP, based on equivariant neural n…
Github Action to: Check version / Test / git tag / GitHub Release / Deploy to PyPI
A Fast, Simplified Model for Molecular Generation with Improved Physical Quality
AlphaFold 3 inference pipeline.