Skip to content
@cancersysbio

Curtis Lab. Stanford School of Medicine

Popular repositories Loading

  1. VirtualTumorEvolution VirtualTumorEvolution Public

    Spatial Simulation of Tumor Growth

    Python 14 11

  2. SCIMET SCIMET Public

    Spatial Computational Inference of MEtastatic Timing (SCIMET)

    Python 14 12

  3. pan-metastasis pan-metastasis Public

    Python 9 5

  4. mCRCs mCRCs Public

    A computational framework for multi-region exome data analysis

    R 8 8

  5. gastric_organoid_evolution gastric_organoid_evolution Public

    Deterministic evolution and stringent selection during pre-neoplasia

    HTML 6 1

  6. VAP VAP Public

    Variant Assurance Pipeline

    Perl 5 3

Repositories

Showing 10 of 21 repositories
  • BERGERON Public
    cancersysbio/BERGERON’s past year of commit activity
    Python 1 0 0 0 Updated Jan 31, 2026
  • CRAWFORD Public
    cancersysbio/CRAWFORD’s past year of commit activity
    Python 0 0 0 0 Updated Jan 31, 2026
  • ecDNAInspector Public

    ecDNAInspector (ecI) provides a systematic method for ecDNA structural validation and analysis, enabling higher-confidence utilization of sequencing data-based predictions in studies of ecDNA.

    cancersysbio/ecDNAInspector’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Dec 1, 2025
  • HTAN-FAP Public

    Code base for HTAN-FAP PreCancer Atlas - doi: 10.1101/2025.09.08.674484

    cancersysbio/HTAN-FAP’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Oct 30, 2025
  • breast-architecture Public
    cancersysbio/breast-architecture’s past year of commit activity
    R 5 MIT 0 1 0 Updated Jan 2, 2025
  • germline-epitopes Public

    Scripts for evaluating germline-derived epitopes (Houlahan et al., 2023)

    cancersysbio/germline-epitopes’s past year of commit activity
    R 1 MIT 0 0 0 Updated Sep 5, 2024
  • VAP Public

    Variant Assurance Pipeline

    cancersysbio/VAP’s past year of commit activity
    Perl 5 3 1 0 Updated Oct 13, 2023
  • amplification_outliers Public

    Code to reproduce the paper "Funtional screenings of amplification outlier oncogenes in organoid models of early tumorigenesis"

    cancersysbio/amplification_outliers’s past year of commit activity
    R 0 0 0 0 Updated Sep 27, 2023
  • microwell_NGS Public
    cancersysbio/microwell_NGS’s past year of commit activity
    0 0 0 0 Updated Aug 1, 2023
  • htan-DCIS Public

    Scripts to recapitulate analysis of HTAN DCIS Atlas

    cancersysbio/htan-DCIS’s past year of commit activity
    R 1 0 0 0 Updated Jun 9, 2023
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Most used topics

Loading…