• Docker RStudio sever with Bioconductor

git clone https://github.com/achiral/rprot.git

cd ./rprot

• change Docker image (ex. achiral/rbioc:latest => FROM docker-ID/docker-image:latest)
• install R packages (see below exampe codes)
  RUN install2.r pkgname1 pkgname2 RUN Rscript -e "install.packages('vector_of_package_names')" RUN Rscript -e 'BiocManager::install("vector_of_package_names")'

• rename Docker image (ex. image: docker-ID/docker-image:latest)
• rename Docker container (ex. container_name: docker-ID/docker-container:latest)

• change password (ex. pw => <your_password>)
• change environment option: (- DISABLE_AUTH=true => false (activate password sign in))

docker-compose up --build -d

open http://localhost:8787/(rstudio/pw (default) or <your_password>)

docker-compose stop (or docker-compose down)

docker-compose start without update (stopped docker container with docker-compose stop) docker-compose up --build -d with update (stopped docker container with docker-compose down)

docker cp <host directory> <container name>:<container ditectory> (ex. docker cp /Users/user/Dropbox/data/. rprot:/home/rstudio/rproject/data/)

docker cp <container name>:<container directory> <host directory>