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1. iHS_beagle_panderas_selscan iHS_beagle_panderas_selscan Public

   This workflow automates the computation of integrated Haplotype Scores (iHS) to detect signals of selection in genomic data. The script performs tasks like chromosome splitting, phasing, population…

   Python 2

2. PCA PCA Public

   Making PCA from .eigenvec file

   R 1

3. master_thesis master_thesis Public

   This repository consists a jupyter notebook that I used during my master's thesis in Animal Breeding and Genomics at Wageningen University and Research. The title of my thesis was " Variants in gen…

   Jupyter Notebook 1

4. iHS_workflow_with_recodeAA iHS_workflow_with_recodeAA Public

   This is a script for iHS calculation using selscan. This Workflow is tailored for population genetics research and includes steps for phasing (Beagle), ancestrala allele polarization, and selection…

   Python 1

5. SNPs2rsIDs_hg19 SNPs2rsIDs_hg19 Public

   This script performs SNP (Single Nucleotide Polymorphism) conversion to rsIDs using the GRCh37/hg19 genome reference.

   R 1

6. SNPs2rsIDs_hg38 SNPs2rsIDs_hg38 Public

   This script performs SNP (Single Nucleotide Polymorphism) conversion to rsIDs using the GRCh38/hg38 genome reference.

   R