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TIA Toolbox

Documentation Status Travis CI Status PyPI Status

Computational Pathology Toolbox developed by TIA Lab

Please try

python -m tiatoolbox -h

Getting Started

First, install OpenSlide here. Then, create and activate the conda environment:

pip

pip install -r requirements.txt

conda

conda env create --name tiatoolbox --file requirements.conda.yml
conda activate tiatoolbox

tiatoolbox --help

usage: tiatoolbox [-h] [--version] [--verbose VERBOSE]
                 {read-region,
                  save-tiles,
                  slide_info,
                  slide-thumbnail,
                  }
                 ...

positional arguments:
  {slide_info}

read-region         usage: tiatoolbox read-region -h
save-tiles          usage: tiatoolbox save-tiles -h
slide-info          usage: tiatoolbox slide-info -h
slide-thumbnail     usage: tiatoolbox slide-thumbnail -h

optional arguments:
  -h, --help            show this help message and exit
  --version             show program`s version number and exit
  --verbose VERBOSE

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Computational Pathology Toolbox developed by TIA Lab

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  • Python 94.9%
  • Makefile 5.1%