input ccf? #2
Description
Hi everyone!
I recently came across a paper that describes the use of this tool for timing CNVs from tumors and would like to give it a shot in our data. I wonder how you derived CCFs and CCF SD (presumably standard deviations) that are used as inputs for the ssnv.tsv file? I was hoping to use information from Mutect2 as the small variant input. Thanks for any advice!
Sincerely,
Chennan