A tool for generating consensus long-read assemblies for bacterial genomes

Ultra-fast and memory-efficient (meta-)genome assembler

⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

SKESA assembler

Git repository for FASTA36 sequence comparison software

Standard bioinformatics pipelines for omics data from spaceflight and space-relevant experiments.

replaced by metabarcode-interactive-tree

small script to draw multi genes locus (e.g. Biosynthetic Gene Clusters) as a dynamic SVG object

Decoding metagenomes: a reference-based metagenomics workflow

This Snakemake pipeline implements the GATK best-practices workflow

Materials for the Training and Engagement Website

A user-friendly workflow for phylogenomics

An index describing the public and private repositories that Banfield lab members can request access to.

Pipeline for major biological analyses.

Autometa: Automated Extraction of Genomes from Shotgun Metagenomes