a broadly applicable tool for automated gene identification and retrieval

C code to translate a DNA sequence using different translation tables. Designed to be fast and lightweight, with few dependencies (only zlib and pthreads)

genbank_to written in Rust

Convert genbank files to a swath of other formats

Reorient circular DNA sequences to prevent gene truncation at the edges

A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.

Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads

Tandem repeat expansion detection or genotyping from long-read alignments

cDNA read preprocessing

OxyMetaG: Oxygen metabolism profiling from metagenomic data

Reference-free clustering and consensus forming of long-read amplicon sequencing

✂️🧬🧩 - rapidly identify structural variation across the bacterial ToL

A phylogenetically-aware framework for detecting evolutionary associations between binary traits

MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates

k-mer-based non-Bayesian Taxonomic Classifier

rxode2

Systematic search of all known anti-phage systems.

Metagenomic Analysis in Real Time

CLI tool for flexible and fast adaptive sampling on ONT sequencers

CRAN as Ubuntu Binaries

A tool for somatic structural variant calling using long reads

Build phylogenomic datasets in seconds.

Fast approximate string searching

Statistical Rethinking Course 2026

Tool for the Quality Control of Long-Read Defined Transcriptomes