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rnaseq Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Nextflow MIT License UpdatedFeb 11, 2025 -
scAmpi_single_cell_RNA Public
Forked from ETH-NEXUS/scAmpi_single_cell_RNACode related to scRNA analysis using the scAmpi workflow
R GNU General Public License v3.0 UpdatedNov 7, 2024 -
cgmlst Public
Forked from jmarshallnz/cgmlstCustom cgMLST tool to address Missing alleles, which were unassigned, by assigning them unique identifiers within the dataset
R UpdatedMay 16, 2024 -
RIMA_pipeline Public
Forked from liulab-dfci/RIMA_pipelineStep by step Tumor immunity ananlysi from Raw bulk RNA-seq data
R UpdatedJan 18, 2024 -
BoF-ImageProcessingTutorial Public
Forked from YunchaoYang/BoF-ImageProcessingTutorialJupyter Notebook UpdatedSep 20, 2022 -
GIBO Public
Genomics Integrated Biobanking Ontology (GIBO), n Ontology to help integrate the domains of biobank with genomic data generation to analysis flow mapped in ontological framework, to help public hea…
UpdatedApr 21, 2022 -
GMS_6803 Public
Forked from PunamA/github-cheat-sheetA list of cool features of Git and GitHub.
Jupyter Notebook MIT License UpdatedDec 9, 2020 -
DC_Ghana_mapping Public
Forked from PunamA/DC_Ghana_mappingGhana malaria mapping project
HTML UpdatedDec 7, 2020 -
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Risk-Modeling Public
This repository can be used for version control of Risk modeling code for ILRI projects
Jupyter Notebook UpdatedNov 9, 2020 -
microbiome_helper Public
Forked from LangilleLab/microbiome_helperA repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
Perl GNU General Public License v3.0 UpdatedJan 16, 2020 -
picrust2 Public
Forked from picrust/picrust2Code, unit tests, and tutorials for running PICRUSt2
Python GNU General Public License v3.0 UpdatedDec 20, 2019 -
prokka Public
Forked from tseemann/prokka⚡ ♒ Rapid prokaryotic genome annotation
Perl UpdatedOct 3, 2019 -
rnaseq_tutorial Public
Forked from griffithlab/rnaseq_tutorialInformatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…
R Other UpdatedAug 6, 2019 -
himap Public
Forked from w4356y/himapHigh-resolution Microbial Analysis Pipeline: pipeline for processing 16S amplicon sequencing data
Jupyter Notebook UpdatedApr 24, 2019