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1. Short_scripts Short_scripts Public

   Small tools to facilitate data parsing

   Shell

2. ascat ascat Public

   Forked from VanLoo-lab/ascat

   ASCAT copy number R package

   R

3. delly delly Public

   Forked from dellytools/delly

   DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

   C++

4. facets facets Public

   Forked from mskcc/facets

   Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

   R

5. cnvkit cnvkit Public

   Forked from etal/cnvkit

   Copy number variant detection from targeted DNA sequencing

   Python

6. THetA THetA Public

   Forked from raphael-group/THetA

   Tumor Heterogeneity Analysis (THetA) is an algorithm that estimates the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. Please note that…

   Python