Code for the development of Isopeptor, described in "Isopeptor: a tool for detecting intramolecular isopeptide bonds in protein structures"
Run isopeptor with colab
or follow these instructions to run locally.
To reproduce use python version 3.12.2 with the following packages installed:
- biotite 1.0.1
- scikit-learn 1.3.0
- pandas 2.1.1
- seaborn 0.13.2
- bio 1.83
- matplotlib 3.8.0
@article{10.1093/bioadv/vbaf049,
author = {Costa, Francesco and Barringer, Rob and Riziotis, Ioannis and Andreeva, Antonina and Bateman, Alex},
title = {Isopeptor: a tool for detecting intramolecular isopeptide bonds in protein structures},
journal = {Bioinformatics Advances},
volume = {5},
number = {1},
pages = {vbaf049},
year = {2025},
month = {03},
issn = {2635-0041},
doi = {10.1093/bioadv/vbaf049},
url = {https://doi.org/10.1093/bioadv/vbaf049},
eprint = {https://academic.oup.com/bioinformaticsadvances/article-pdf/5/1/vbaf049/62375500/vbaf049.pdf},
}