The utility evaluates TMRCA (Time to the Most Recent Common Ancestor) by Y-STR loci and then performs ranking relative to the base haplotype.

• General info
• Screenshots
• Technologies
• Setup
• Example of Using
• Status
• Inspiration
• Contact

TMRCA calculations among civilian researchers mainly use data on tandem mutations at STR (Short Tandem Repeats) loci of the male chromosome. You can read more:

• TMRCA
• Poisson distribution
• Y-STR

• Java - version 11
• Spark - version 2.12

 Options:

    * -a, --age
      Average age
      Default: 0
      -h, --help
      Help/Usage
    * -i, --index
      Index of haplotype
    * -p, --path
      Path to csv file

Execute the jar:

    java -jar target/ranking.jar -p /path/to/DataSet.csv -i indexOfHaplotype -a averageAge
    java -jar target/ranking.jar -h
    java -jar target/ranking.jar

Note: The first column should be named "Index", followed by the names of the loci.

• Before ranking: DataSet
• After ranking: RankedDataSet

Project is: finished

The project was carried out for research purposes for a group of scientists

Created by Gurianov Mark - feel free to contact me!