Popular repositories Loading

1. abritamr abritamr Public

   A pipeline for running AMRfinderPlus and collating results into functional classes

   Python 91 18

2. bohra bohra Public

   A pipeline for bioinformatics analysis of bacterial genomes

   Nextflow 32 5

3. mlstdb mlstdb Public

   A Python package to update the MLST database for the mlst tool.

   Python 18 1

4. meningotype meningotype Public

   In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis

   Python 14 9

5. emmtyper emmtyper Public

   Forked from Andre-Tan/EmMAIL

   emm Automatic Isolate Labeller

   Jupyter Notebook 12 5

6. pango-collapse pango-collapse Public

   app to collapse Pango lineages for reporting

   Python 12 1