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Dehalobacter_modelling

Supplementary code for Dehalobacter FBA simulations

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Model files are in the SBML format:

iOB638.xml - Dehalobacter restrictus SAD

iOB649.xml - Ca. Dehaloabacter alkaniphilus DAD

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Code file is in a jupyter notebook:

The Jupyter notebook file demonstrates the flux balanace anylsis simulations dsicussed in the paper, and results in generation of Supplementary Tables S10 and S11.

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Please cite:

Modeling reveals metabolic basis of competition among Dehalobacter strains during tandem CF and DCM metabolism

Olivia Bulka, Elizabeth A. Edwards, Radhakrishnan Mahadevan

bioRxiv 2025.03.03.641252; doi: https://doi.org/10.1101/2025.03.03.641252

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